Supplementary Table 1.
Sequences used in Phylogenetic Analysis by Maximum Likelihood analysis.
| Gene | Domain | Species | Accessiona |
|---|---|---|---|
| CAR | Full-length | Human | NM_005122 |
| Rhesus | AY116212 | ||
| Mouse | NM_009803 | ||
| Rat | NM_022941 | ||
| Fur Seal | AB109554 | ||
| Baikal seal | AB109553 | ||
| LBD only | Dog | AAEX01049487 and AAEX01049488 | |
| DBD only | Cow | 30573, December 10, 2004 | |
| PXR | Full-length | Human | NM_003889 |
| Chimpanzee | Nov. 2003 chimpanzee Arachne assembly, NCBI Build 1 version 1, UCSC: panTro1 | ||
| Rhesus | AF454671 | ||
| Rabbit | AF188476 | ||
| Mouse | AF031814 | ||
| Rat | AF151377 | ||
| LBD only | Dog | AF454670 | |
| Pig | AF454672 | ||
| VDR | Full-length | Human | NM_000376 |
| Cotton-top tamarin | AF354232 | ||
| Mouse | NM_009504 | ||
| Rat | NM_017058 | ||
| DBD only | Chimpanzee | Nov. 2003 chimpanzee Arachne assembly, NCBI Build 1 version 1, UCSC: panTro1 | |
| TRα | Full-length | Human | NM_003250 |
| Sheep | Z68308 | ||
| Pig | AJ005797 | ||
| Rat | M18028 | ||
| Mouse | NM_178060 | ||
| DBD only | Chimpanzee | Nov. 2003 chimpanzee Arachne assembly, NCBI Build 1 version 1, UCSC: panTro1 | |
| FXR | Full-length | Human | NM_005123 |
| Chimp | Nov. 2003 chimpanzee Arachne assembly, NCBI Build 1 version 1, UCSC: panTro1 | ||
| Rabbit | AF497630 | ||
| Golder hamster | AF478441 | ||
| Mouse | NM_009108 | ||
| Rat | NM_021745 |
a All accession number refer to Genbank sequences unless otherwise specified.
Abbreviations: CAR, constitutive androstane receptor: PXR, pregnane X receptor; VDR, vitamin D receptor; TRα, thyroid receptor-α, FXR, farnesoid X receptor; DBD, DNA binding domain; LBD, ligand binding domain; NCBI, The National Center for Biotechnology Information; UCSC, The University of California Santa Cruz.