Table 1.
Biallelic loci typed in total population sample
| Chromosome location | Haplotype position | Gene | NCBI Locus Link | Nuclotide position | NCBI Genbank | NCBI contig | Contig position | Ancestral allele | NCBI dbSNP# |
|---|---|---|---|---|---|---|---|---|---|
| 3p21 | |||||||||
| 1 | CCR3 | 1232 | Y17YA/G | NM_001837 | NT_05827 | 3997337 | A | 4987053 | |
| 2 | CCR2 | 1231 | -5983 G/A | U95626 | NT_05827 | 4083672 | G | ||
| 3 | CCR2 | 1231 | -5048 G/T | U95626 | NT_05827 | 4084607 | G | 3918357 | |
| 4 | CCR2 | 1231 | -4866 G/C | U95626 | NT_05827 | 4084789 | G | 3918370 | |
| 5 | CCR2 | 1231 | -3433 T/C | U95626 | NT_05827 | 4086222 | T | 3092964 | |
| 6 | CCR2 | 1231 | V64I C/T | NM_000647 | NT_05827 | 4089845 | C | 1799864 | |
| 7 | CCR2 | 1231 | N260N A/G | NM_000647 | NT_05827 | 4090435 | G | 1799865 | |
| 8 | CCR5 | 1234 | 208 C/A | NM_000579 | NT_05827 | 4102477 | C | 2734648 | |
| 9 | CCR5 | 1234 | 303 C/T | NM_000579 | NT_05827 | 4102572 | C | 1799987 | |
| 10 | CCR5 | 1234 | 676 T/C | NM_000579 | NT_05827 | 4102945 | T | 1800023 | |
| 11 | CCR5 | 1234 | L55Q T/A | NM_000579 | NT_05827 | 4015194 | T | 1799863 | |
| 12 | CCR5 | 1234 | D32 | NM_000579 | NT_05827 | WT | |||
| 13 | CCRL2 | 9034 | 1243V C/T | NM_003965 | NT_05827 | 4140934 | T | 3204850 | |
| 14 | CCRL2 | 9034 | 1137 C/G | NM_003965 | NT_05827 | 4141344 | C | ||
| 3p21.3 | |||||||||
| CX3CRI | 1524 | V2491 G/A | NM_001337 | NT_037565 | 1246118 | G | 3732379 | ||
| CX3CRI | 1524 | T280M C/T | NM_001337 | NT_037565 | 1246212 | C | 3732378 | ||
| 4q 12-13 | |||||||||
| ENA-78 (CXCI.5) | 6374 | Q56Q G/A | NM_002997 | NT_006216 | 3371007 | G | 425535 | ||
| 4q21 | |||||||||
| GRO1 (CXCL1) | 2919 | 1086 G/A | X54489 | NT_006216 | 3243154 | A | 4074 | ||
| GRO1 (CXCL1) | 2919 | 1176 C/T | X54489 | NT_006216 | 3243245 | C | 1814092 | ||
| IPIO(CXCLIO) | 3627 | 503 C/G | NM_001565 | NT_016354 | 1437648 | C | 3921 | ||
| 17q21.1-21.2 | |||||||||
| MCPI (CCL2) | 6347 | -362 C/G | M37719 | NT_010799 | 7315787 | n/d | 2857656 | ||
| EOTAXIN (CCL11) | 6356 | -1382 C/T | Z92709 | NT_010799 | 7345226 | n/d | 4795895 | ||
| 17q12 | |||||||||
| 1 | MPIF-1 (CCL23) | 6368 | MI06VG/A | U85767 | NT_010799 | 9074064 | A | 1003645 | |
| 2 | PARC (CCL18) | 6362 | -1 16 C/T | AB0121 13 | NT_010799 | 9125397 | C | 2015086 | |
| 3 | PARC (CCL18) | 6362 | 81 G/A | AB0121 13 | NT_010799 | 9125563 | G | 2015070 | |
| 4 | PARC (CCL18) | 6362 | 311 C/A | AB0121 13 | NT_010799 | 9125793 | A | 2015052 | |
| 5 | PARC (CCL18) | 6362 | 6793 A/G | AB0121 13 | NT_010799 | 9132275 | G | 14304 | |
| 6 | MIP-IA(CCL3) | 6348 | - 1541 T/C | M23178 | NT_010799 | 9152727 | C | 1634497 |
Abbreviations: NCBI = National Center for Biotechnology Information; dbSNP = Database for single nucleotide polymorphisms.