Table 1.
Populations and summary statistics for autosomal single nucleotide polymorphism (SNP) loci
Population | Location | Sample size | Heterozygositya | Monomorphic SNP loci | % HWE deviationsb |
---|---|---|---|---|---|
Mbuti | Ituri forest | 20 | 0.280 | 0.126 | 0.050 |
Mende | Sierra Leone | 22 | 0.323 | 0.074 | 0.058 |
Burunge | Tanzania | 20 | 0.341 | 0.049 | 0.062 |
Spanish | Valencia | 20 | 0.346 | 0.057 | 0.063 |
Indian | India | 22 | 0.356 | 0.042 | 0.050 |
Upper caste | India | 11 | 0.357 | 0.070 | 0.047 |
Lower caste | India | 11 | 0.352 | 0.077 | 0.040 |
Nasioi | Melanesia | 19 | 0.280 | 0.181 | 0.031 |
Altaian | Siberia | 20 | 0.350 | 0.048 | 0.046 |
East Asian | USA | 20 | 0.327 | 0.096 | 0.045 |
Chinese | USA | 10 | 0.327 | 0.135 | 0.023 |
Japanese | USA | 10 | 0.324 | 0.146 | 0.022 |
Nahua | Mexico | 20 | 0.295 | 0.156 | 0.069 |
Quechua | Peru | 20 | 0.297 | 0.127 | 0.062 |
Total sample | 203 | 0.377 | 0.000 | 0.536 |
a Average unbiased heterozygosity.
b Proportion of deviations from Hardy-Weinberg equilibrium (HWE) using α = 0.05 with standard χ2 test.