Function	Localization	AGI locus identifier	Description	Expression fold change	Treatment
Photosynthesis	Thylakoid membrane	At4g04640	ATP synthase subunit gamma	−1.11	MeJA
		At1g60950	Ferredoxin A	−1.02
		At3g16250	Photosynthetic NDH subcomplex B3	−1.35
		At3g54890	PSI light harvesting protein Lhca1	−1.06
		At3g61470	PSI light harvesting protein Lhca2	−1.14
		At1g61520	PSI light harvesting protein Lhca3	−1.06
		At1g29930	PSII chlorophyll a/b-binding protein Lhcb1.3	−1.16
		At2g05070	PSII chlorophyll a/b-binding protein Lhcb2.2	−1.47
		At3g08940	PSII chlorophyll a/b-binding protein Lhcb4.2	−1.20
		At3g50820	PsbO subunit of PSII oxygen-evolving complex	−1.24
		At4g05180	PsbQ subunit of PSII oxygen-evolving complex	−1.02
Calvin cycle	Chloroplast stroma	At3g54050	Fructose 1,6-bisphosphate phosphatase	−1.62	MeJA
		At4g38970	Fructose 1,6-bisphosphate aldolase	−1.08
		At3g12780	Phosphoglycerate kinase	−1.08
		At1g32060	Phosphoribulokinase	−1.28
		At3g04790	Ribose 5-phosphate isomerase	−1.18
		At3g55800	Sedoheptulose bisphosphatase	−1.14
ROS-responsive	Chloroplast	At5g01600	Ferritin 1
		At1g63940	Monodehydroascorbate reductase 6 (MDAR6)
	Mitochondrion	At3g22370	Alternative oxidase 1a (AOX1a)
		At5g50160	Ferric chelate reductase
	Plasma membrane	At5g20230	Copper-binding protein/Senescence-associated gene 14 (SAG14)
		At5g47910	Respiratory burst oxidase homolog D (RboHD)
	Apoplast	At4g12880	Early nodulin-like protein 19 (ENODL19)
	Cytoplasm	At1g45145	Thioredoxin 5
		At4g35000	Ascorbate peroxidase 3
		At1g19570	Dehydroascorbate reductase 1/5
		At5g18600	Glutaredoxin-like protein
	ER	At3g62950	Glutaredoxin (GRXC11)
		At4g15690	Glutaredoxin (GRXS5)
Chlorophyll-binding	Thylakoid	At3g22840	Early light-inducible protein 1 (ELIP1)
	Membrane	At4g14690	Early light-inducible protein 2 (ELIP2)
Siroheme biosynthesis	Chloroplast	At5g40850	Uroporphyrin methyltransferase (UPM1)
JA synthesis enzymes	Chloroplast	At3g45140	Lipoxygenase 2 (LOX2)
		At5g42650	Allene oxide synthase
		At3g25780	Allene oxide cyclize
Negative regulation of JA-induced gene expression	Nucleus	At1g19180	Jasmonate ZIM-domain protein 1 (JAZ1)
		At1g74950	Jasmonate ZIM-domain protein 2 (JAZ2)
		At3g17860	Jasmonate ZIM-domain protein 3 (JAZ3)
		At1g17380	Jasmonate ZIM-domain protein 5 (JAZ5)
		At1g72450	Jasmonate ZIM-domain protein 6 (JAZ6)
		At2g34600	Jasmonate ZIM-domain protein 7 (JAZ7)
		At1g30135	Jasmonate ZIM-domain protein 8 (JAZ8)
		At1g70700	Jasmonate ZIM-domain protein 9 (JAZ9)
		At5g13220	Jasmonate ZIM-domain protein 10 (JAZ10)
		At5g20900	Jasmonate ZIM-domain protein 12 (JAZ12)
		At4g28910	Novel interactor of JAZ (NINJA)
Transcriptional activator of JA-responsive gene expression	Nucleus	At1g32640	MYC2
		At5g46760	MYC3
		At4g17880	MYC4
JA signaling regulation	Cytoplasm/nucleus	At3g12850	Involved in COP9 signalosome complex
Catalyzes JA-Ile synthesis, promotes JA signaling pathway	Cytoplasm	At2g46370	JA resistance1 (JAR1)
Interacts with JAZ, required for JA-induced gene expression	Nucleus	At2g39940	Coronatine insensitive 1 (COI1)
Relay of singlet oxygen-induced signal	Thylakoid	At4g33630	Executer1 (EX1)
	Membrane	At1g27510	Executer2 (EX2)