Table 1.
Position of the polymorphic sites and geographic distribution of the haplotypes. The haplotype numbers (Hap) are listed in the first column, and N indicates the number of individuals in which the haplotype was observed. Nucleotides identical to haplotype 1 are indicated by dots (BC – Belize City; BR – northern Brazil; DG – Dangriga; EA/IP – eastern Atlantic/Indo-Pacific; EG – eastern Gulf of Mexico (Pine Island, Terra Ceia and Yankeetown); NY – northern Yucatan (Laguna Yalahau northern Yucatan); WA – western Atlantic (Bulls Bay and Georgia); WG – western Gulf of Mexico (Padre Island)). Note that the different haplotype groups are shaded in different tones of gray.
| Hap | Nucleotide position
|
N | Population
|
|||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 5 | 8 | 1 | 1 | 1 | 2 | 2 | 3 | 3 | 3 | 3 | 3 | 3 | 4 | 4 | 5 | 5 | 5 | 5 | 6 | 6 | 7 | 7 | 7 | 7 | 8 | 8 | 9 | 1 | 1 | ||||||||||
| 8 | 5 | 7 | 3 | 8 | 3 | 4 | 5 | 0 | 8 | 0 | 2 | 4 | 6 | 7 | 7 | 7 | 7 | 4 | 5 | 7 | 9 | 2 | 8 | 5 | 5 | 6 | 7 | 2 | 4 | 1 | 0 | 0 | ||||||||||
| 9 | 4 | 0 | 8 | 0 | 6 | 4 | 5 | 8 | 8 | 9 | 2 | 3 | 9 | 0 | 3 | 3 | 7 | 6 | 6 | 7 | 0 | 7 | 6 | 5 | 1 | 5 | 5 | |||||||||||||||
| 4 | 5 | WA | EG | WG | NY | BC | DG | EA/IP | BR | |||||||||||||||||||||||||||||||||
| H1 | T | C | A | T | T | T | C | A | C | A | T | G | T | A | T | A | C | G | G | A | A | - | C | A | A | G | A | T | G | T | A | - | A | 125 | 35 | 53 | 14 | 23 | ||||
| H2 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | C | . | - | . | 52 | 12 | 34 | 6 | |||||
| H3 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | C | . | - | G | 21 | 15 | 6 | ||||||
| H4 | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H5 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | C | - | - | . | 29 | 11 | 13 | 5 | |||||
| H6 | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | C | - | - | . | 17 | 4 | 7 | 6 | |||||
| H7 | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | . | . | - | . | 3 | 3 | |||||||
| H8 | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H9 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | G | . | - | . | . | . | . | . | . | . | . | . | - | . | 4 | 4 | |||||||
| H10 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | G | . | - | . | . | . | . | . | . | . | C | . | - | G | 13 | 2 | 11 | ||||||
| H11 | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | . | . | - | . | 2 | 2 | |||||||
| H12 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | C | . | C | . | - | G | 3 | 3 | |||||||
| H13 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | - | . | . | . | . | . | . | . | . | . | - | G | 2 | 2 | |||||||
| H14 | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | C | . | . | . | . | G | . | . | . | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H15 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | C | . | . | . | . | G | . | . | . | . | . | . | . | C | . | TA | G | 9 | 8 | 1 | ||||||
| H16 | . | . | . | . | . | . | . | . | T | . | . | . | . | . | A | . | C | . | . | . | . | G | . | . | . | . | . | . | . | C | . | TA | G | 5 | 5 | |||||||
| H17 | . | . | . | . | . | . | T | . | . | G | . | . | . | . | . | . | C | . | . | . | . | G | . | . | . | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H18 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | G | . | G | . | . | . | . | . | . | . | . | . | - | G | 1 | 1 | |||||||
| H19 | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | C | . | . | G | . | G | . | . | . | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H20 | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | G | . | . | . | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H21 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | C | . | . | . | . | G | . | . | . | . | . | . | . | . | . | TA | G | 16 | 7 | 9 | ||||||
| H22 | . | . | . | . | . | . | . | . | T | . | . | . | . | . | A | . | C | . | . | . | . | G | . | . | . | . | . | . | . | . | . | TA | G | 12 | 2 | 10 | ||||||
| H23 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | C | . | . | G | . | G | . | . | . | . | . | . | . | . | . | TA | G | 3 | 3 | |||||||
| H24 | C | . | - | C | . | . | . | G | T | . | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | C | . | - | . | 20 | 20 | |||||||
| H25 | C | . | - | C | . | . | . | G | . | . | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H26 | C | . | - | C | . | . | . | G | T | . | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | . | . | - | . | 1 | 1 | |||||||
| H27 | C | . | - | C | . | . | . | G | T | . | C | . | . | G | A | . | C | . | . | T | . | G | T | C | G | . | . | . | . | C | . | - | . | 2 | 2 | |||||||
| H28 | C | . | . | C | . | . | . | G | T | . | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | C | . | - | . | 2 | 2 | |||||||
| H29 | C | . | . | C | C | . | . | G | T | . | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H30 | C | . | . | C | C | . | . | G | T | G | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H31 | C | . | - | C | . | . | . | G | T | . | C | A | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | . | . | - | . | 1 | 1 | |||||||
| H32 | C | . | - | C | . | . | . | G | T | G | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H33 | C | . | - | C | . | . | . | G | T | . | C | . | . | G | A | . | C | . | A | T | . | G | . | C | G | A | . | . | . | C | . | - | . | 5 | 5 | |||||||
| H34 | C | . | - | C | . | . | . | G | T | G | C | A | . | G | A | . | C | . | A | T | . | G | . | C | G | A | . | . | A | . | . | - | . | 2 | 2 | |||||||
| H35 | C | . | - | C | . | . | . | G | T | . | C | . | . | G | A | . | C | . | . | T | . | G | . | C | G | A | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H36 | C | . | - | C | . | . | . | G | . | . | C | . | . | G | A | . | C | . | A | T | . | G | . | C | G | A | C | . | A | C | . | - | . | 1 | 1 | |||||||
| H37 | C | . | . | C | . | . | . | G | T | . | C | A | . | G | A | . | C | . | A | T | . | G | . | C | G | A | . | . | A | C | . | - | . | 2 | 2 | |||||||
| H38 | . | . | . | . | . | A | T | . | . | . | C | . | . | . | . | . | T | A | . | . | . | G | . | . | G | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H39 | C | . | . | . | . | A | T | . | T | G | C | . | C | . | . | . | T | A | . | . | . | G | . | . | . | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H40 | C | . | . | . | . | A | T | . | T | G | C | . | . | . | . | . | T | A | . | . | . | G | . | . | . | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H41 | . | . | . | . | . | A | T | . | . | G | C | . | . | . | . | . | T | A | . | . | . | G | . | . | G | . | . | . | . | C | . | - | . | 11 | 11 | |||||||
| H42 | . | . | . | . | . | A | T | . | . | G | C | . | . | . | . | G | T | A | . | . | . | G | . | . | G | . | . | . | . | . | . | - | . | 1 | 1 | |||||||
| H43 | . | . | . | . | . | A | T | . | . | G | C | . | . | . | A | . | T | A | . | . | . | G | . | . | G | . | . | . | . | C | . | - | . | 1 | 1 | |||||||
| H44 | C | . | . | . | . | A | T | . | T | G | C | . | C | . | . | . | T | A | . | . | . | G | . | . | G | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H45 | . | . | . | . | . | A | T | . | . | G | C | . | . | . | . | . | T | A | . | . | G | G | . | . | G | . | . | . | . | C | . | - | . | 4 | 4 | |||||||
| H46 | . | . | . | . | . | A | T | . | . | G | C | . | . | . | . | . | T | A | . | . | G | G | . | . | G | . | . | . | . | C | . | TA | G | 1 | 1 | |||||||
| H47 | C | . | . | . | . | A | T | . | T | G | C | . | . | . | . | . | T | A | . | . | . | G | . | . | G | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H48 | . | . | . | . | . | A | T | . | T | G | C | . | . | . | . | G | T | A | . | . | . | G | . | . | G | . | . | . | . | C | - | - | . | 1 | 1 | |||||||
| H49 | . | . | . | . | . | A | T | . | . | G | C | . | . | . | . | . | T | A | . | . | . | G | . | . | G | . | . | . | . | . | . | - | . | 1 | 1 | |||||||