TABLE 1.
Summary of Participating Core Facilities and Sequencing Yield
| Facility | Team size | Team runs | Instrument runs | Region | Peak length | All reads |
Reads >397 nt |
||
|---|---|---|---|---|---|---|---|---|---|
| Read count (%Δ)a | Bases (%Δ)a | Read count (%)b | Bases (%)b | ||||||
| A | 2 | 22 | 22 | 1 | 481 | 601,679 (−10.55) | 238,617,862 (−10.45) | 398,245 (66.19) | 189,657,001 (79.48) |
| 2 | 477 | 596,503 (−2.62) | 235,886,896 (−1.52) | 395,681 (66.33) | 187,629,648 (79.54) | ||||
| 1 and 2 | 481 | 1,198,182 (−6.77) | 474,504,758 (−6.22) | 793,926 (66.26) | 377,286,649 (79.51) | ||||
| B | 5 | 172 | 163 | 1 | 481 | 679,997 (1.10) | 273,067,587 (2.48) | 464,393 (68.29) | 222,011,763 (81.30) |
| 2 | 475 | 625,654 (2.14) | 243,215,385 (1.54) | 385,954 (61.69) | 182,799,792 (75.16) | ||||
| 1 and 2 | 481 | 1,305,651 (1.59) | 516,282,972 (2.04) | 850,347 (65.13) | 404,811,555 (78.41) | ||||
| C | 3 | 128 | 128 | 1 | 481 | 791,274 (17.64) | 296,820,523 (11.4) | 480,925 (60.78) | 227,892,482 (76.78) |
| 2 | 477 | 774,951 (26.51) | 283,485,969 (18.35) | 444,718 (57.39) | 209,747,097 (73.99) | ||||
| 1 and 2 | 477 | 1,566,225 (21.87) | 580,306,492 (14.69) | 925,643 (59.10) | 437,639,579 (75.42) | ||||
| D | 2 | 5 | 5 | 1 | 478 | 743,160 (10.49) | 308,348,892 (15.72) | 536,017 (72.13) | 256,322,790 (83.13) |
| 2 | 478 | 563,799 (−7.96) | 239,814,876 (0.12) | 425,479 (75.47) | 204,793,870 (85.40) | ||||
| 1 and 2 | 478 | 1,306,959 (1.70) | 548,163,768 (8.34) | 961,496 (73.57) | 461,116,660 (84.12) | ||||
| E | 7 | 345 | 197 | 1 | 475 | 546,931 (−18.69) | 215,406,359 (−19.16) | 346,190 (63.30) | 163,197,131 (75.76) |
| 2 | 473 | 501,900 (−18.07) | 195,249,283 (−18.49) | 309,626 (61.69) | 145,532,130 (74.54) | ||||
| 1 and 2 | 473 | 1,048,831 (−18.39) | 410,655,642 (−18.84) | 655,816 (62.53) | 308,729,261 (75.18) | ||||
a
Percent deviation from average across all facilities for that category.
b
Percent of total reads or bases for that region.