Table 4.
List of 22 genes of the OsDREB1C-specific regulon of commonly cold-induced DEGs between C418 and K354
|
Gene ID |
Annotation |
Fold change [K354] vs [C418]a |
Fold change [K354 stress] vs [K354 control] |
Fold change [C418 stress] vs [C418 control] |
Co-expressed with OsDREB1C (r > 0.9) in other microarray experiments available at TIGR websiteb |
||||
|---|---|---|---|---|---|---|---|---|---|
| Control | 2 h | 6 h | 2 h | 6 h | 2 h | 6 h | |||
| LOC_Os06g03670 |
OsDREB1C |
|
|
|
6.08 |
35.80 |
33.09 |
60.14 |
|
|
OsDREB1 regulon |
|
|
|
|
|
|
|
|
|
| LOC_Os04g33820 |
OsFBX132 - F-box domain containing protein, expressed |
|
|
|
|
|
|
|
GSE6901,GSE18361,E-MEXP-2267,E-MEXP-1766 |
| LOC_Os01g17050 |
VQ domain containing protein, putative, expressed |
|
|
|
|
5.46 |
8.04 |
5.32 |
GSE11025,GSE18361 |
| LOC_Os01g48190 |
drought induced 19 protein, putative, expressed |
|
|
|
|
6.53 |
8.53 |
|
|
| LOC_Os01g51670 |
expressed protein |
|
|
|
|
|
13.96 |
7.19 |
GSE11025,GSE18361 |
| LOC_Os01g52730 |
DUF584 domain containing protein, putative, expressed |
|
|
|
6.27 |
8.36 |
9.59 |
7.32 |
GSE18361 |
| LOC_Os01g56890 |
expressed protein |
|
|
|
|
|
5.50 |
|
|
| LOC_Os01g58130 |
expressed protein |
|
|
|
|
|
7.89 |
|
GSE18361 |
| LOC_Os01g58140 |
expressed protein |
|
|
|
|
|
9.10 |
6.98 |
GSE18361 |
| LOC_Os01g64470 |
harpin-induced protein 1 domain containing protein, expressed |
|
|
|
|
5.27 |
8.31 |
6.40 |
GSE11025,GSE18361,GSE17245 |
| LOC_Os02g52210 |
zinc finger, C3HC4 type domain containing protein, expressed |
|
|
|
|
|
5.95 |
|
|
| LOC_Os04g58890 |
expressed protein |
|
|
|
|
|
8.68 |
|
GSE11025,GSE18361 |
| LOC_Os05g03620 |
TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed |
0.19 |
|
|
|
|
6.76 |
|
GSE18361 |
| LOC_Os05g31620 |
OsCML15 - Calmodulin-related calcium sensor protein, expressed |
|
|
|
6.92 |
9.40 |
11.39 |
7.48 |
GSE18361,E-MEXP-1766 |
| LOC_Os05g35500 |
MYB family transcription factor, putative, expressed |
0.12 |
|
|
|
|
8.14 |
|
|
| LOC_Os05g39930 |
spotted leaf 11, putative, expressed |
|
|
|
|
|
7.82 |
5.07 |
GSE11025,GSE18361 |
| LOC_Os05g47960 |
expressed protein |
0.18 |
|
|
|
|
15.73 |
5.76 |
GSE11025,GSE18361 |
| LOC_Os06g13760 |
glycosyl transferase 8 domain containing protein, putative, expressed |
|
|
|
|
|
5.47 |
5.44 |
|
| LOC_Os07g47790 |
AP2 domain containing protein, expressed |
0.12 |
|
|
|
|
13.54 |
5.87 |
GSE18361 |
| LOC_Os08g19670 |
expressed protein |
0.20 |
|
|
|
|
7.90 |
|
GSE18361 |
| LOC_Os08g31090 |
expressed protein |
|
|
|
|
|
5.76 |
|
GSE11025,GSE18361 |
| LOC_Os08g34580 |
trehalose-6-phosphate synthase, putative, expressed |
0.09 |
|
|
|
|
11.36 |
|
E-MEXP-2267,E-MEXP-1766 |
| LOC_Os09g37080 | expressed protein | 0.20 | 5.93 | 11.85 | 6.33 | GSE11025,GSE18361,GSE6893,GSE17245 | |||
a. DEGs identified by using the empirical criterion of more than 5-fold change and cut-off p < 0.05 in SAM based on three independent biological replicates.
b. Experiment ID of other rice microarray experiments at TIGR website [30].