Table 2.
The human chromosome 14 assembly results in terms of continuity, accuracy, and statistics.
| Evaluations | Continuity | Accuracy | Statistics | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Contig # | NG50 (kbp) | NG50 corr. (kbp) | SNP | Indels | Misjoins | Asm. (%) | Unaligned ref. (%) | Duplicated ref. (%) | |
| Velvet 61k | 28,974 | 5.2 | 4.7 | 82,235 | 17,755 | 601 | 96.69 | 2.09 | 0.43 |
| Tiger-Velvet-R 125i | 20,189 | 11.6 | 9.3 | 84,577 | 21,847 | 533 | 97.90 | 1.98 | 1.50 |
| Tiger-Velvet-I 7i | 21,623 | 10.9 | 8.9 | 84,811 | 21,470 | 654 | 98.43 | 1.53 | 1.48 |
| SOAPdenovo 55k | 50,094 | 3.0 | 3.0 | 67,956 | 11,866 | 36 | 95.91 | 3.13 | 0.28 |
| Tiger-Soap-R 120i | 60,134 | 3.6 | 3.4 | 68,881 | 12,839 | 185 | 99.40 | 3.01 | 2.79 |
| Tiger-Soap-I 7i | 55,173 | 3.8 | 3.6 | 69,215 | 13,390 | 205 | 98.68 | 2.43 | 1.46 |
The columns include the number of contigs, NG50 size and its error-corrected size, the number of single nucleotide polymorphisms (SNPs), the number of indels and misjoins in contigs, total assembly length, genome coverage (100 - Unaligned ref.), and duplications. K-mer 61 and 55 are the best k-mer sizes for Velvet and SOAPdenovo, respectively. "#k" stands for the applied k-mer size. "#i" stands for the iteration number.