Table 3. Performance of microbial standard DNA in qPCR reactions.
16S | Standardtype | Standard curvea | R2 | Efficiency (%)b |
Bacteriac | Amplicon | y = −3.74±0.03x +37.41±0.21 | 0.999 | 84.9 |
Linear | y = −3.75±0.02x +38.05±0.14 | 0.999 | 84.7 | |
Nicked circles | y = −3.61±0.04x +37.49±0.20 | 0.999 | 87.3 | |
Supercoiled | y = −3.63±0.03x +38.26±0.15 | 0.999 | 88.7 | |
Archaead | Amplicon | y = −3.64±0.01x +36.99±0.07 | 0.999 | 88.4 |
Linear | y = −3.62±0.06x +37.22±0.32 | 0.999 | 89.0 | |
Nicked circles | y = −3.48±0.06x +36.62±0.31 | 0.999 | 93.7 | |
Supercoiled | y = −3.56±0.02x +37.15±0.13 | 0.999 | 91.0 |
Linear regression between Ct (y-intercept) and log10 starting copy number (x, i.e. slope).
Efficiency (%) calculated: E = (101/slope−1)×100.
Bacteria: T. lienii.
Archaea: A. fulgidus.