Table 1.
Summary of sequencing and assembly results for rose flowers
| V | M | S | H | |
|---|---|---|---|---|
|
Raw data | ||||
| Read No. |
151,906 |
132,974 |
107,816 |
115,707 |
| Read length (bp) |
34,317,306 |
29,145,021 |
23,643,473 |
26,107,242 |
| Avg. read length (bp) |
225.91 |
219.18 |
219.30 |
225.63 |
|
Statistics after pre processing | ||||
| Read No. |
142,421 |
116,397 |
95,875 |
109,067 |
| |
(93.76 %) |
(87.53 %) |
(88.92 %) |
(94.26 %) |
| Read length (bp) |
33,112,590 |
27,277,537 |
22,306,881 |
25,260,565 |
| Avg. read length (bp) |
232.50 |
234.35 |
232.67 |
231.61 |
|
Sequence clustering and assembly | ||||
| Clustered reads |
120,931 |
97,250 |
73,768 |
84,281 |
| Clustered range |
2-4,792 |
2-3,726 |
2-1,353 |
2-980 |
| Contigs (assembled by TGICL a) |
14,167 |
12,287 |
12,618 |
15,366 |
| Singlets b |
3,501 |
3,261 |
3,406 |
3,814 |
| Singlets c |
17,989 |
15,886 |
18,701 |
20,542 |
| Avg. contigs length (bp) | 397.60 | 441.52 | 416.45 | 369.33 |
a TGICL: TIGR Gene Index CLustering tools, b reads that are clustered but not assembled into contigs, c un-clustered reads by TGICL.
Abbreviations: V: ‘Vital’; M: ‘Maroussia’; S: ‘Sympathy’; H: ‘Haedang’.