Table 3.
miRNA distribution
| V | M | S | H | ||
|---|---|---|---|---|---|
| Total sRNA No. |
7,440,941 |
11,814,817 |
9,210,732 |
11,368,773 |
|
| Trimmed sRNAs |
7,339,459 |
11,646,177 |
9,049,517 |
11,201,170 |
|
| Unique sRNAs |
2,231,008 |
2,520,957 |
2,590,637 |
2,955,175 |
|
|
Preprocessing |
|
||||
| tRNAs |
12,638 |
14,647 |
11,942 |
12,925 |
|
| rRNAs |
50,020 |
70,718 |
49,317 |
56,084 |
|
| other RNAs |
1,552 |
2,123 |
1,774 |
1,518 |
|
| Masking |
2,166,798 |
2,433,469 |
2,527,604 |
2,884,648 |
|
| 18nt to 26nt unique sRNAs after pre-processing |
2,097,062 |
2,338,032 |
2,439,306 |
2,824,442 |
|
| 18nt to 26nt total sRNAs after pre-processing |
5,400,748 |
6,498,879 |
6,456,832 |
6,930,547 |
|
|
Total identified miRNAs |
|
|
|
|
Total |
| sRNA align to strawberry genome |
754,825 |
919,179 |
815,779 |
600,561 |
|
| Total predicted miRNAs (Unique) |
183 (122) |
186 (125) |
186 (125) |
179 (120) |
192 (130) |
| Conserved miRNAs in miRBase (Unique) |
155 (101) |
155 (102) |
158 (104) |
154 (100) |
159 (105) |
| Novel miRNAs (Unique) |
28 (21) |
31 (23) |
28 (21) |
25 (20) |
33(25) |
| Found by homology search with miRBase a |
136 |
137 |
137 |
128 |
137 |
| Total miRNA groups (Major) |
78 (40) |
82 (42) |
80 (40) |
75 (41) |
84 (53) |
| Conserved miRNA groups (Major) |
63 (27) |
65 (28) |
65 (28) |
61 (28) |
65 (37) |
| Novel miRNA groups (Major) | 15 (13) | 17 (14) | 15 (12) | 14 (13) | 19 (16) |
a The number of miRNAs searched by BLAST against known miRNAs in the miRBase [86]. Abbreviations: V: ‘Vital’; M: ‘Maroussia’; S: ‘Sympathy’; H: ‘Haedang’.