Table II.
Comparison of Rv0301 to Structural Homologues Using DALI
| Name | PDB ID (Chain) | Organism | Z | RMSD (Å) | lali | nres | %id | Description |
|---|---|---|---|---|---|---|---|---|
| Rv0301 | 3H87 (A) | Mycobacterium tuberculosis | 28.9 | 0 | 136 | 136 | 100 | Hypothetical protein (VapC toxin) |
| PH0500 | 1V96 (B) | Pyrococcus horikoshii | 15.6 | 2.9 | 130 | 144 | 18 | Hypothetical protein |
| FitB | 2H1C (A) | Neisseria gonorrhoeae | 15 | 2.3 | 123 | 139 | 17 | Trafficking protein B (VapC toxin) |
| Rv0627 | 3DBO (B) | Mycobacterium tuberculosis | 13.7 | 2.6 | 115 | 126 | 22 | Hypothetical protein (VapC toxin) |
| PAE2754 | 1V8P (I) | Pyrobaculum aerophilum | 12.2 | 2.8 | 114 | 132 | 25 | Hypothetical protein |
| AF1683 | 1W8I (A) | Archaeoglobus fulgidus | 11.3 | 3.1 | 121 | 155 | 21 | Hypothetical protein |
| PAE0151 | 2FE1 (A) | Pyrobaculum aerophilum | 10.7 | 2.8 | 112 | 130 | 17 | Conserved hypothetical protein (VapC toxin) |
| AF0591 | 1O4W (A) | Archaeoglobus fulgidus | 9.3 | 3.1 | 97 | 125 | 16 | PIN domain protein |
| TTHA0540 | 3IX7 (B) | Thermus thermophilus | 9.1 | 3.3 | 100 | 130 | 17 | PIN domain of uncharacterized protein |
| MJ1533 | 3I8O (A) | Methanocaldococcus jannaschii | 8.5 | 3.1 | 96 | 140 | 14 | PIN domain of KH domain-containing protein |
| SMG6 | 2HWW (B) | Homo sapiens | 7.9 | 2.7 | 97 | 157 | 10 | PIN domain of telomerase-binding protein EST1A |
lali gives the number of aligned positions; nres gives the total number of residues in matched structure.