Table 2.
Large-scale lincRNA involved genomic copy number changes and allelic imbalances detected by Illumina HumanOmni5 array.
| Case ID | CN gains | CN losses | Allelic imbalances | |||
|---|---|---|---|---|---|---|
| Cytoband | lincRNAs (n) | Cytoband | lincRNAs (n) | Cytoband | lincRNAs (n) | |
| BC-1 | 10q11.22 | 1 | ||||
| 9p12–p11.2 | 11 | |||||
| BC-2 | 6p11.2 | 1 | ||||
| BC-3 | 9p24.1 | 1 | 3q26.32a | 1 | 4q13.3 | 1 |
| 4p15.1 | 1 | 10q11.22 | 1 | |||
| 7p11.2 | 1 | |||||
| 14q32.33 | 1 | |||||
| 20p11.1 | 1 | |||||
| 10q11.22 | 1 | |||||
| BC-4 | 1q44 | 3 | ||||
| 2p25.3 | 3 | |||||
| 3p26.3 | 6 | |||||
| 4q35.2 | 3 | 8p23.2 | 1 | |||
| 5p15.33 | 1 | 15q11.1– q11.2 | 8 | |||
| 8p23.3 | 1 | |||||
| 9p24.2 | 1 | |||||
| 10p15.3 | 1 | |||||
| 11q25 | 3 | |||||
| 12p13.33, 12q24.33 | 5 | |||||
| 13q34 | 3 | |||||
| 15q26.3 | 1 | |||||
| 21q22.3 | 3 | |||||
| BC-5 | 11p15.5 | 1 | 1q44 | 1 | ||
| Xq13.1 | 4 | 2p25.3 | 5 | |||
| 3p26.2,3p26.3 | 6 | |||||
| 4q35.2 | 7 | |||||
| 6q27 | 6 | |||||
| 7q36.3 | 2 | |||||
| 8p23.2 | 1 | |||||
| 10p15.3 | 1 | |||||
| 12q24.33, 12p13.33 | 1 | |||||
| 13q34 | 3 | |||||
| 15q26.3 | 1 | |||||
| 18p11.31,18p11.32 | 2 | |||||
| BC-6 | 9p21.3–p21.2 | 1 | 9p24.1–p21.3b, 9p24.3–p24.12 | 27 | 2p11.1 | 1 |
| 9p12–p11.2, 9p21.3–p21.2 | 12 | |||||
| 10q11.22 | 3 | |||||
| BC-7 | 10q11.22 | 3 | ||||
a
Homozygous Copy Loss.
b
LOH.