Table 3.
Significantly over- or underrepresented functional categories among probe sets commonly responding to mitochondrial (top) or chloroplast (bottom) dysfunction as determined by PageMan analysis.
| BIN | Bin name | Counted | Genome | p-Value | Ratio |
|---|---|---|---|---|---|
| MITOCHONDRIAL PERTURBATIONS | |||||
| 5.3 | Fermentation.ADH | 1 | 1 | 0.0320 | 31.25 |
| 25.1 | C1-metabolism.formate dehydrogenase | 1 | 1 | 0.0320 | 31.25 |
| 27.3.82 | RNA.regulation of transcription.plant TF (pbf2) | 1 | 1 | 0.0320 | 31.25 |
| 9.2.2 | Mitochondrial electron transport/ATP synthesis.NADH-DH external | 2 | 4 | 0.0059 | 15.62 |
| 9.4 | Mitochondrial electron transport/ATP synthesis.alternative oxidase | 2 | 5 | 0.0096 | 12.50 |
| 11.9.4.13 | Lipidmetabolism.lipid degradation.beta-oxidation.acyl CoA reductase | 2 | 6 | 0.0141 | 10.42 |
| 27.3.66 | RNA.regulation of transcription.Pseudo ARR transcription factor family | 2 | 8 | 0.0252 | 7.81 |
| 24.2 | Biodegradation of Xenobiotics | 2 | 10 | 0.0388 | 6.25 |
| 23.1.2 | Nucleotide metabolism.synthesis.purine | 3 | 15 | 0.0111 | 6.25 |
| 12 | N-metabolism | 4 | 24 | 0.0066 | 5.21 |
| 27.3.7 | RNA.regulation of transcription, Constans-like zinc finger family | 4 | 25 | 0.0077 | 5.00 |
| 21.4 | Redox.glutaredoxins | 5 | 33 | 0.0037 | 4.73 |
| 29.6 | Protein.folding | 9 | 62 | 0.0001 | 4.54 |
| 15.2 | Metal handling.binding, chelation, and storage | 6 | 44 | 0.0026 | 4.26 |
| 3.2 | Minor CHO metabolism.trehalose | 3 | 22 | 0.0320 | 4.26 |
| 9.9 | Mitochondrial electron transport/ATP synthesis.F1-ATPase | 3 | 22 | 0.0320 | 4.26 |
| 30.2.17 | Signaling.receptor kinases.DUF 26 | 6 | 44 | 0.0026 | 4.26 |
| 26.9 | Glutathione S-transferases | 7 | 53 | 0.0014 | 4.13 |
| 28.1.3 | DNA.synthesis/chromatin structure.histone | 6 | 46 | 0.0033 | 4.08 |
| 9.7 | Mitochondrial electron transport/ATP synthesis.cytochrome c oxidase | 3 | 23 | 0.0359 | 4.08 |
| 23.1 | Nucleotide metabolism.synthesis | 4 | 32 | 0.0184 | 3.91 |
| 17.5.2 | Hormone metabolism.ethylene | 4 | 35 | 0.0248 | 3.57 |
| 9 | Mitochondrial electron transport/ATP synthesis | 14 | 124 | 0.0000 | 3.53 |
| 27.3.26 | RNA.regulation of transcription.MYB-related transcription factor family | 4 | 40 | 0.0383 | 3.12 |
| 29.5.9 | Protein.degradation.AAA-type | 4 | 41 | 0.0414 | 3.05 |
| 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 6 | 62 | 0.0142 | 3.02 |
| 17.2 | Hormone metabolism.auxin | 14 | 152 | 0.0004 | 2.88 |
| 13.2 | Amino acid metabolism.degradation (glutamate, GABA) | 6 | 67 | 0.0202 | 2.80 |
| 2 | Major CHO metabolism | 8 | 99 | 0.0141 | 2.52 |
| 20.2.1 | Stress.abiotic.heat | 12 | 151 | 0.0034 | 2.48 |
| 29.2.1.1 | Protein.synthesis.ribosomal protein.prokaryotic | 10 | 127 | 0.0077 | 2.46 |
| 16.8 | Secondary metabolism.flavonoids | 6 | 82 | 0.0476 | 2.29 |
| 10 | Cell wall | 33 | 471 | 0.0000 | 2.19 |
| 34.16 | Transport.ABC transporters and multidrug resistance systems | 8 | 115 | 0.0315 | 2.17 |
| 29.5.11 | Protein.degradation.ubiquitin | 12 | 988 | 0.0001 | 0.38 |
| 1 | PS photosystems | 1 | 187 | 0.0336 | 0.17 |
| CHLOROPLAST PERTUBATIONS | |||||
| 19.16 | Tetrapyrrole synthesis.chlorophyll b synthase | 1 | 1 | 0.0266 | 37.54 |
| 16.8.2.1 | Secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase | 1 | 1 | 0.0266 | 37.54 |
| 13.2.2.2 | Amino acid metabolism.degradation.glutamatefamily.proline | 2 | 3 | 0.0021 | 25.02 |
| 19.14 | Tetrapyrrole synthesis.protochlorophyllide reductase | 2 | 3 | 0.0021 | 25.02 |
| 11.1.11 | Lipid metabolism, FA synthesis, and FA elongation.fatty acid elongase | 2 | 5 | 0.0067 | 15.01 |
| 1.1 | PS.light reaction | 49 | 136 | 0.0000 | 13.52 |
| 1 | PS | 59 | 187 | 0.0000 | 11.84 |
| 13.1.5.1 | Amino acid metabolism.synthesis.serine-glycine-cysteine group.serine | 2 | 7 | 0.0136 | 10.72 |
| 1.3 | PS.calvincyle | 7 | 31 | 0.0000 | 8.48 |
| 20.2.2 | Stress.abiotic.cold | 4 | 20 | 0.0017 | 7.51 |
| 21.4 | Redox.glutaredoxins | 6 | 33 | 0.0002 | 6.82 |
| 17.8 | Hormone metabolism.salicylic acid | 3 | 19 | 0.0133 | 5.93 |
| 33.1 | Development.storage proteins | 4 | 26 | 0.0047 | 5.77 |
| 2.1.2 | Major CHO metabolism.synthesis.starch | 4 | 26 | 0.0047 | 5.77 |
| 14 | S-assimilation | 2 | 13 | 0.0455 | 5.77 |
| 1.2 | PS.photo-respiration | 3 | 20 | 0.0153 | 5.63 |
| 19 | Tetrapyrrole synthesis | 6 | 45 | 0.0012 | 5.00 |
| 21.2.1 | Redox.ascorbate and glutathione.ascorbate | 3 | 24 | 0.0251 | 4.69 |
| 33.2 | Development.late embryogenesis abundant | 3 | 26 | 0.0310 | 4.33 |
| 2.2.2 | Major CHO metabolism.degradation.starch | 3 | 26 | 0.0310 | 4.33 |
| 26.9 | Misc.glutathione S-transferases | 6 | 53 | 0.0028 | 4.25 |
| 29.2.1.1.1 | Protein.synthesis.ribosomalprotein.prokaryotic.chloroplast | 7 | 68 | 0.0022 | 3.86 |
| 17.5 | Hormone metabolism.ethylene | 9 | 93 | 0.0008 | 3.63 |
| 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 6 | 62 | 0.0061 | 3.63 |
| 16.5.1 | Secondary metabolism.sulfur-containing.glucosinolates | 5 | 54 | 0.0143 | 3.48 |
| 17.3 | Hormone metabolism.brassinosteroid | 4 | 49 | 0.0412 | 3.06 |
| 29.6 | Protein.folding | 5 | 62 | 0.0246 | 3.03 |
| 17.1 | Hormone metabolism.abscisic acid | 4 | 50 | 0.0438 | 3.00 |
| 20.2.1 | Stress.abiotic.heat | 12 | 151 | 0.0007 | 2.98 |
| 15 | Metal handling | 5 | 64 | 0.0278 | 2.93 |
| 10.7 | Cellwall.modification | 5 | 66 | 0.0312 | 2.84 |
| 17.2 | Hormone metabolism.auxin | 11 | 152 | 0.0026 | 2.72 |
| 21 | Redox | 13 | 190 | 0.0018 | 2.57 |
| 26.1 | Misc.cytochrome P450 | 13 | 199 | 0.0027 | 2.45 |
| 29.5.11 | Protein.degradation.ubiquitin | 13 | 988 | 0.0045 | 0.49 |
| 29.4 | Protein.postranslational modification | 6 | 668 | 0.0020 | 0.34 |
| 28.1 | DNA.synthesis/chromatin structure | 1 | 753 | 0.0000 | 0.05 |
Counted: number of members per functional category in specific probe list; Genome: number of members per functional category genome-wide; p-value: statistical significance; ratio: foldchange of number of members per functional category compared to the expected random distribution.