Table 4.
Marker genes for mitochondrial and/or chloroplast perturbations.
| Probe ID | Mitoch. perturb. | Chloropl. perturb. | AGI Code | Description | Loc. |
|---|---|---|---|---|---|
| 260522_x_at | 11 | 7 | AT2G41730 | Unknown protein | c |
| 264042_at | 10 | 7 | AT2G03760 | AtST1 sulfosteroid transferase | c |
| 263402_at | 10 | 6 | AT2G04050 | MATE efflux family protein | pm |
| 263515_at | 10 | 6 | AT2G21640 | UPOX | m |
| 253046_at | 9 | 6 | AT4G37370 | CYP81D8 cytochrome P450 | er |
| 247655_at | 7 | 6 | AT5G59820 | ZAT12 transcription factor | n |
| 263231_at | 7 | 6 | AT1G05680 | UGT74E2 IBA UDP-glucosyl transferase | c |
| 245038_at | 6 | 7 | AT2G26560 | Phospholipase 2A PLP2 | c |
| 263403_at | 6 | 7 | AT2G04040 | ATDTX1 MATE transporter | pm |
| 246099_at | 6 | 6 | AT5G20230 | AtBCB Blue-Copper binding protein | pm |
| 247949_at | 6 | 6 | AT5G57220 | CYP81F2 cytochrome P450 | er |
| 252131_at | 6 | 6 | AT3G50930 | BCS1 AAA-type ATPase family protein | m |
| 256376_s_at | 6 | 6 | AT1G66690;AT1G66700 | SAM:carboxyl methyltransferase | c |
| 259479_at | 6 | 6 | AT1G19020 | Unknown protein | c |
| 250515_at | 10 | 0 | AT5G09570 | Unknown protein AtMSM1 | p, m |
| 253322_at | 8 | 1 | AT4G33980 | Unknown protein | n |
| 267036_at | 8 | 1 | AT2G38465 | Unknown protein | pm |
| 267364_at | 8 | 0 | AT2G40080 | ELF4 (EARLY FLOWERING 4) | n |
| 248709_at | 7 | 0 | AT5G48470 | Unknown protein | n |
| 252563_at | 7 | 1 | AT3G45970 | Expansin ATEXLA1 | ec |
| 254208_at | 7 | 0 | AT4G24175 | Unknown protein | p |
| 256060_at | 7 | 1 | AT1G07050 | CONSTANS-like protein | n |
| 256252_at | 7 | 0 | AT3G11340 | UGT76B1 glycosyltransferase | pm |
| 263483_at | 7 | 0 | AT2G04030 | Heat shock protein 90.5 kDa | p |
| 267237_s_at | 7 | 0 | AT2G44040; AT3G59890 | Dihydrodipicolinate reductase family | p, m |
| 267474_at | 7 | 0 | AT2G02740 | ATWHY3 transcription factor | p, m |
| 256999_at | 1 | 7 | AT3G14200 | DNAJ heat shock protein | n |
| 262374_s_at | 0 | 7 | AT1G72910; AT1G72930 | Disease resistance protein TIR-NBS | c |
| 245876_at | 1 | 6 | AT1G26230 | Chaperonin TCP-1 | p |
| 246313_at | 1 | 6 | AT1G31920 | Pentatricopeptide (PPR) repeat- protein | c |
| 246792_at | 1 | 6 | AT5G27290 | Unknown protein | p |
| 250054_at | 1 | 6 | AT5G17860 | CAX7 calcium exchanger | pm |
| 251218_at | 1 | 6 | AT3G62410 | CP12-2 | p |
| 253104_at | 1 | 6 | AT4G36010 | Pathogenesis-related thaumatin family | ec |
| 253971_at | 1 | 6 | AT4G26530 | Fructose-bisphosphate aldolase | p |
| 256015_at | 1 | 6 | AT1G19150 | LHCA6 PSI light-harvesting complex | p |
| 260266_at | 1 | 6 | AT1G68520 | Zinc finger (B-box type) family protein | n |
| 261118_at | 1 | 6 | AT1G75460 | ATP-dependent LON protease | p |
| 264774_at | 1 | 6 | AT1G22890 | Unknown protein | ec |
| 266279_at | 1 | 6 | AT2G29290 | Tropinone reductase | c |
Top: list of probe sets that respond to at least six experiments affecting mitochondrial and chloroplast perturbations. Middle: list of probe sets that respond in at least six experiments affecting mitochondrial function but not chloroplast function. Bottom: list of probe sets that respond in at least six experiments that affect chloroplast function but not mitochondrial function. Abbreviations: Loc, subcellular location; p, plastid; m, mitochondrial; pm, plasma membrane; ec, extracellular; er, endoplasmic reticulum; n, nucleus; c, cytosol. Underlined locations indicated experimental evidence.