Table 5.
Occurrence of known transcription factor binding sites in marker genes.
| MITOCHONDRIAL AND CHLOROPLAST PERTURBATIONS | ||||
|---|---|---|---|---|
| AGI Code | Description | W-box | T-box | CACGTG |
| AT2G41730 | Unknown protein | 3 | 1 | |
| AT2G03760 | AtST1 sulfosteroid transferase | 2 | 1 | |
| AT2G04050 | MATE efflux family protein | 1 | 1 | |
| AT2G21640 | UPOX | 2 | 1 | |
| AT4G37370 | CYP81D8 cytochrome P450 | 3 | 2 | 1 |
| AT5G59820 | ZAT12 transcription factor | 1 | 1 | |
| AT1G05680 | UGT74E2 IBA UDP-glucosyl transferase | 1 | 1 | 1 |
| AT2G26560 | Phospholipase 2A PLP2 | 3 | 2 | |
| AT2G04040 | ATDTX1 MATE transporter | 3 | 1 | |
| AT5G20230 | AtBCB Blue-Copper binding protein | 1 | 1 | |
| AT5G57220 | CYP81F2 cytochrome P450 | 2 | 4 | |
| AT3G50930 | BCS1 AAA-type ATPase family protein | 2 | 1 | |
| AT1G66690 | SAM:carboxylmethyl transferase | 1 | 1 | |
| AT1G19020 | Unknown protein | 3 | ||
| MITOCHONDRIAL PERTURBATIONS | ||||
| AGI Code | Description | Evening Element | MYB | |
| AT5G09570 | Unknown protein AtMSM1 | |||
| AT4G33980 | Unknown protein | 1 | ||
| AT2G38465 | Unknown protein | |||
| AT2G40080 | ELF4 (EARLY FLOWERING 4) | 1 | ||
| AT5G48470 | Unknown protein | |||
| AT3G45970 | Expansin ATEXLA1 | 1 | ||
| AT4G24175 | Unknown protein | |||
| AT1G07050 | CONSTANS-like protein | 1 | 1 | |
| AT3G11340 | UGT76B1 glycosyltransferase | |||
| AT2G04030 | Heat shock protein 90.5 kDa | 1 | ||
| AT2G44040 | Dihydrodipicolinate reductase family | 1 | ||
| AT2G02740 | ATWHY3 transcription factor | |||
| CHLOROPLAST PERTURBATIONS | ||||
| AGI Code | Description | I-box | GCCGCC | ABRE |
| AT3G14200 | DNAJ heat shock protein | 1 | 1 | |
| AT1G72910 | Disease resistance protein TIR-NBS | 1 | 1 | |
| AT1G26230 | Chaperonin TCP-1 | |||
| AT1G31920 | Pentatricopeptide (PPR) repeat- protein | 1 | ||
| AT5G27290 | Unknown protein | 1 | ||
| AT5G17860 | CAX7 calcium exchanger | |||
| AT3G62410 | CP12-2 | 1 | ||
| AT4G36010 | Pathogenesis-related thaumatin family | 1 | ||
| AT4G26530 | Fructose-bisphosphate aldolase | 1 | ||
| AT1G19150 | LHCA6 PSI light-harvesting complex | |||
| AT1G68520 | Zinc finger (B-box type) family protein | 3 | ||
| AT1G75460 | ATP-dependent LON protease | 1 | 1 | |
| AT1G22890 | Unknown protein | 1 | ||
| AT2G29290 | Tropinone reductase | 1 | ||
The 1 kb upstream promoter region of the marker genes for mitochondrial and/or chloroplast perturbations were searched for known transcription factor binding motifs. Statistically overrepresented motifs are shown for the different marker genes. The number of occurrences of each element per promoter are shown.