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. 2012 Dec 10;11:193–217. doi: 10.4137/CIN.S10375

Table S1.

List of the 71 metagenes.

Metagene Type # genes
12q13 Chromosome region 28
14q24 Chromosome region 18
16q22 Chromosome region 23
16q24 Chromosome region 14
17q23 Chromosome region 13
17q25 Chromosome region 16
1p31 Chromosome region 14
1q42 Chromosome region 24
20q11 Chromosome region 10
20q13 Chromosome region 29
5q14 Chromosome region 6
5q33 Chromosome region 7
8p21 Chromosome region 14
8q22 Chromosome region 12
8q24 Chromosome region 21
ACTINYPATHWAY Biological pathway 14
AMINOACYL_TRNA_BIOSYNTHESIS Biological pathway 8
ARAPPATHWAY Biological pathway 5
ATRBRCAPATHWAY Biological pathway 10
BETA_ALANINE_METABOLISM Biological pathway 11
CELL_CYCLE_KEGG Biological pathway 39
DNA_REPLICATION_REACTOME Biological pathway 19
EGFPATHWAY Biological pathway 8
ELECTRON_TRANSPORT_CHAIN Biological pathway 39
ERBB2_GRB7 Biological pathway 2
FATTY_ACID_METABOLISM Biological pathway 20
FRUCTOSE_AND_MANNOSE_METABOLISM Biological pathway 10
G2PATHWAY Biological pathway 11
GCCATNTTG_V$YY1_Q6 Transcription factor binding motif 65
GLEEVECPATHWAY Biological pathway 7
GLYCEROLIPID_METABOLISM Biological pathway 14
GLYCOLYSIS_AND_GLUCONEOGENESIS Biological pathway 12
GPCRPATHWAY Biological pathway 8
HISTIDINE_METABOLISM Biological pathway 11
Il-12 Biological pathway 8
MRNA_PROCESSING_REACTOME Biological pathway 24
MRPPATHWAY Biological pathway 3
NUCLEAR_RECEPTORS Biological pathway 12
OXIDATIVE_PHOSPHORYLATION Biological pathway 26
PDGFPATHWAY Biological pathway 7
PENTOSE_PHOSPHATE_PATHWAY Biological pathway 11
PPARAPATHWAY Biological pathway 10
PROTEASOME_DEGRADATION Biological pathway 18
PURINE_METABOLISM Biological pathway 28
PYRIMIDINE_METABOLISM Biological pathway 23
RNA_TRANSCRIPTION_REACTOME Biological pathway 9
S1P_SIGNALING Biological pathway 6
S1P54_01 Biological pathway 53
TGASTMAGC_V$NFE2_01 Transcription factor binding motif 35
TNFR2 Biological pathway 9
TOLLPATHWAY Biological pathway 10
UBIQUITIN_MEDIATED_PROTEOLYSIS Biological pathway 2
V$AP1_01 Transcription factor binding motif 39
V$AP2_Q3 Transcription factor binding motif 33
V$ARNT_02 Transcription factor binding motif 34
V$BACH1_01 Transcription factor binding motif 50
V$CETS1P54_01 Transcription factor binding motif 53
V$COUP_DR1_Q6 Transcription factor binding motif 29
V$E2F_Q6_01 Transcription factor binding motif 52
V$ELK1_02 Transcription factor binding motif 38
V$ER_Q6_02 Transcription factor binding motif 25
V$GABP_B Transcription factor binding motif 20
V$HIF1_Q5 Transcription factor binding motif 27
V$MYCMAX_B Transcription factor binding motif 54
V$NFY_Q6 Transcription factor binding motif 22
V$NRF1_Q6 Transcription factor binding motif 35
V$NRF2_01 Transcription factor binding motif 35
V$SP1_Q6_01 Transcription factor binding motif 26
V$USF2_Q6 Transcription factor binding motif 34
VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION Biological pathway 15
VEGFPATHWAY Biological pathway 9

Notes: The first column shows the name of the metagenes. The second column shows whether the metagene covers a biological pathway, chromosomal region or genes sharing a specific transcription factor binding motif. # genes lists the number of genes underlying the final metagene.