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Mapping speed and RAM benchmarks on the experimental RNA-seq dataset
| Aligner | Mapping speed: million read pairs/hour |
Peak physical RAM, GB |
||
|---|---|---|---|---|
| 6 threads | 12 threads | 6 threads | 12 threads | |
| STAR | 309.2 | 549.9 | 27.0 | 28.4 |
| STAR sparse | 227.6 | 423.1 | 15.6 | 16.0 |
| TopHat2 | 8.0 | 10.1 | 4.1 | 11.3 |
| RUM | 5.1 | 7.6 | 26.9 | 53.8 |
| MapSplice | 3.0 | 3.1 | 3.3 | 3.3 |
| GSNAP | 1.8 | 2.8 | 25.9 | 27.0 |
