Figure 4.

Clone Finder search results. Top: search interface. Users can query a selected assembly by coordinate or feature (circle). A series of filters (red box) can be applied to restrict search results. This example shows a search for clones belonging to selected libraries that are mapped to the genomic interval containing NCAM1 in the GRCh37.p5 human reference assembly. Bottom: search results. The ideogram at top provides a chromosomal context for the search (red arrow). The graphic display below shows the chromosome coordinates and sequence identifiers of the contigs and components that comprise it, along with annotated RefSeq and Ensembl genes and transcripts (black arrows). Beneath this, placements from each library are presented in separated panels. As noted, concordant placements for clones within the region are colored in green and discordant placements in red. The display of these placements, like the option to the display results in tabular format, can be toggled on and off (red rectangle). Search results can also be downloaded to Excel for further analysis (red circle).