Table 1.
OrthoDB species and gene content
| Lineage Representative species | Input genes |
Classified genes (%) | Percentage of classified genes |
||
|---|---|---|---|---|---|
| Total | Average | in groups with annotation(s)a | in groups with phenotype(s)b | ||
| 52 Vertebrates | 951 245 | 18 293 | 92.7 | 96.3 | 48.4 |
| Homo sapiens | 20 827 | na | 94.9 | 93.5 | 45.6 |
| Mus musculus | 23 075 | na | 87.0 | 96.5 | 47.9 |
| Danio rerio | 26 206 | na | 80.7 | 96.9 | 48.5 |
| 45 Arthropods | 746 324 | 16 585 | 71.1 | 87.1 | 25.1 |
| Drosophila melanogaster | 13 927 | na | 96.1 | 86.5 | 26.6 |
| 110c Metazoa | 1 974 947 | 17 954 | 81.9 | 93.5 | 60.8 |
| Caenorhabditis elegans | 20 517 | na | 71.5 | 84.7 | 61.4 |
| 142 Fungi | 1 223 848 | 8619 | 85.0 | 86.8 | 49.3 |
| Saccharomyces cerevisiae | 6652 | na | 96.2 | 91.9 | 94.8 |
| 1115 Bacteria | 3 532 434 | 3168 | 91.0 | 91.6 | 47.1 |
| Escherichia coli | 4149 | na | 97.8 | 97.7 | 98.8 |
| Haemophilus influenza | 1657 | na | 98.2 | 98.8 | 85.3 |
| Mycobacterium tuberculosis | 3977 | na | 95.5 | 93.3 | 35.9 |
Statistics describing OrthoDB species coverage of vertebrate, arthropod, basal metazoan, fungal and bacterial orthologs with rich functional annotations.
aGO terms or InterPro domains.
bFrom Online Mendelian Inheritance in Man, the Mouse Genome Database, the Zebrafish Model Organism Database, FlyBase, WormBase, Saccharomyces Genome Database, EcoGene or the Database of Essential Genes.
c13 basal metazoan species plus 52 vertebrates and 45 arthropods.