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Analysis of TFBSs to improve the quality of PWMs in the RegulonDB database. OxyR binds in tandem, covering regions of ∼40 bp (a). We identified within these regions, two inverted-repeat motifs of 17 bp, separated by 5 bp (b). Therefore, we now propose a new consensus sequence, GATAGGTTnAACCTATC, for the binding sites of OxyR. This new annotation has improved the quality of the matrices (b) and, therefore, also the predictions of binding sites for OxyR.
