Table 2.
Examples of HEXEvent database outputs
| chromo | strand | start | end | count | alt3 | alt5 | alt3+5 | skip | constit Level | incl Level | 3usage Level | 5usage Level | alt3single Count | alt3single Loc | alt5single Count | alt5single Loc | alt3and5single Count | alt3and5 singleLoc | OnlyEST exonCount | OnlyEST exons | genename |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| All exons of gene ARMCX4, all alternative eventsa | |||||||||||||||||||||
| chrX | + | 100 673 897 | 100 673 988 | 15 | 0 | 1 | 0 | 0 | 0.938 | 1.000 | 1.000 | 0.938 | 0 | # | 1 | 100 673 984 | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 699 039 | 100 699 143 | 9 | 0 | 0 | 0 | 7 | 0.562 | 0.562 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 700 985 | 100 701 032 | 7 | 0 | 0 | 0 | 5 | 0.583 | 0.583 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 741 009 | 100 741 079 | 33 | 5 | 5 | 1 | 1 | 0.733 | 0.978 | 0.864 | 0.864 | 5 | 100 741 012 | 5 | 100 741 085 | 1 | 100 741 012– 100 741 085b | 0 | # | ARMCX4 |
| chrX | + | 100 742 179 | 100 742 259 | 45 | 1 | 0 | 0 | 0 | 0.978 | 1.000 | 0.978 | 1.000 | 1 | 100 742 191 | 0 | # | 0 | # | 1 | chrX+100 742 179– 100 742 255c | ARMCX4 |
| chrX | + | 100 742 594 | 100 742 678 | 44 | 0 | 0 | 0 | 0 | 1.000 | 1.000 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 743 030 | 100 743 086 | 38 | 7 | 0 | 0 | 0 | 0.844 | 1.000 | 0.844 | 1.000 | 7 | 100 742 994 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 743 430 | 100 744 302 | 5 | 0 | 0 | 0 | 19 | 0.208 | 0.208 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 753 131 | 100 754 353 | 5 | 0 | 2 | 0 | 0 | 0.714 | 1.000 | 1.000 | 0.714 | 0 | # | 2 | 100 753 318 | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 759 923 | 100 760 342 | 5 | 0 | 0 | 0 | 0 | 1.000 | 1.000 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 764 345 | 100 764 414 | 3 | 3 | 0 | 0 | 0 | 0.500 | 1.000 | 0.500 | 1.000 | 3 | 100764350 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 764 576 | 100 764 665 | 7 | 0 | 0 | 0 | 0 | 1.000 | 1.000 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 766 011 | 100 766 042 | 7 | 0 | 0 | 0 | 0 | 1.000 | 1.000 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 779 190 | 100 779 419 | 2 | 1 | 0 | 0 | 3 | 0.333 | 0.500 | 0.667 | 1.000 | 1 | 100779272 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 786 630 | 100 786 999 | 3 | 0 | 0 | 0 | 0 | 1.000 | 1.000 | 1.000 | 1.000 | 0 | # | 0 | # | 0 | # | 0 | # | ARMCX4 |
| All exons with an alternative 3′-splice site of gene ARMCX4, no other alternative events allowedd | |||||||||||||||||||||
| chrX | + | 100 742 179 | 100 742 259 | 45 | 1 | 0 | 0 | 0 | 0.978 | 1.000 | 0.978 | 1.000 | 1 | 100 742 191 | 0 | # | 0 | # | 1 | chrX+100 742 179– 100 742 255c | ARMCX4 |
| chrX | + | 100 743 030 | 100 743 086 | 38 | 7 | 0 | 0 | 0 | 0.844 | 1.000 | 0.844 | 1.000 | 7 | 100 742 994 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 764 345 | 100 764 414 | 3 | 3 | 0 | 0 | 0 | 0.500 | 1.000 | 0.500 | 1.000 | 3 | 100 764 350 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| All exons with an alternative 3′-splice site of gene ARMCX4, other alternative events possiblee | |||||||||||||||||||||
| chrX | + | 100 741 009 | 100 741 079 | 33 | 5 | 5 | 1 | 1 | 0.733 | 0.978 | 0.864 | 0.864 | 5 | 100 741 012 | 5 | 100 741 085 | 1 | 100 741 012– 100 741 085b | 0 | # | ARMCX4 |
| chrX | + | 100 742 179 | 100 742 259 | 45 | 1 | 0 | 0 | 0 | 0.978 | 1.000 | 0.978 | 1.000 | 1 | 100 742 191 | 0 | # | 0 | # | 1 | chrX+100 742 179– 100 742 255c | ARMCX4 |
| chrX | + | 100 743 030 | 100 743 086 | 38 | 7 | 0 | 0 | 0 | 0.844 | 1.000 | 0.844 | 1.000 | 7 | 100 742 994 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 764 345 | 100 764 414 | 3 | 3 | 0 | 0 | 0 | 0.500 | 1.000 | 0.500 | 1.000 | 3 | 100 764 350 | 0 | # | 0 | # | 0 | # | ARMCX4 |
| chrX | + | 100 779 190 | 100 779 419 | 2 | 1 | 0 | 0 | 3 | 0.333 | 0.500 | 0.667 | 1.000 | 1 | 100 779 272 | 0 | # | 0 | # | 0 | # | ARMCX4 |
Columns are as defined in Table 1. All ‘hash’ symbol indicate a non-existing value, meaning that there are no alternative 3′- or 5′-splice sites known.
aOutput files were generated when searching for all internal human exons of the gene ARMCX4 including all of their known alternative splicing events.
bLocation of both alternative splice sites (3′- and 5′-splice site).
cLocation of an alternative version of the exon not found in the UCSC Gene list, but in ESTs. It is given in the format ‘chromosomeSTRANDstart-end’.
dOutput files were generated when searching for internal human exons of the gene ARMCX4 that have an alternative 3′-splice site, but do not show any other alternative event.
eOutput files were generated when searching for internal human exons of the gene ARMCX4 that have an alternative 3′-splice site and possibly show other alternative splicing events.