Table 1.
Primer sequences, polymerase chain reaction and denaturing high-performance liquid chromatography conditions for detection of gene polymorphisms
Gene | Primer sequence | PCR annealing temperature (°C) | PCR product size (bp) | DHPLC application type | Oven temperature (°C) |
IL-1B-31 | F: AGAAGCTTCCACCAATACTC | 60 | 240 | Mutation | 59 |
R: AGCACCTAGTTGTAAGGAAG | |||||
IL-1B-511 | F: TGGCATTGATCTGGTTCATC | 58.5 | 306 | Mutation | 60.5 |
R: GTTTAGGAATCTTCCCACTT | |||||
IL-1 RN | F: CCCCTCGAGCAACATCC | 59 | 270-442 | VNTR | 50.0 |
R: GGTCAGAAGGGCAGAGA |
DHPLC: Denaturing high-performance liquid chromatography; VNTR: Variable number of identical tandem repeats; PCR: Polymerase chain reaction; IL: Interleukin.