Table 3.
The 10 alleles most informative about regional ancestry, among 9346 alleles at 783 microsatellite loci. Ancestry information content for alleles was calculated according to the In measure of Rosenberg et al. (2003a, eq. 5). Loosely speaking, according to this measure, an allele is most informative about regional ancestry if the knowledge that an individual has the allele enables accurate inferences to be made about the source population of the individual, and if the allele is sufficiently common that it enables ancestry inference for a substantial fraction of all individuals.
Locus | Alternate name of locus | Allele size | Allelic informativeness | Allele frequency | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Africa | Europe | Middle East | Central/ South Asia | East Asia | Oceania | America | ||||
GTTTT002P | 140 | 0.169 | 0.033 | 0 | 0.006 | 0.002 | 0.002 | 0.667 | 0 | |
D6S1006 | ATC4D09 | 194 | 0.136 | 0.631 | 0.364 | 0.555 | 0.239 | 0.036 | 0 | 0.014 |
D12S2070 | ATA25F09 | 95 | 0.127 | 0.187 | 0.078 | 0.072 | 0.126 | 0.403 | 0.014 | 0.852 |
D2S2986 | 2QTEL47 | 158 | 0.124 | 0.074 | 0.029 | 0.016 | 0.071 | 0.365 | 0.569 | 0.598 |
ATAC026P | 198 | 0.124 | 0.541 | 0.006 | 0.071 | 0.027 | 0 | 0 | 0.005 | |
AAT258 | 145 | 0.120 | 0.070 | 0.007 | 0.046 | 0.042 | 0.021 | 0 | 0.604 | |
GATA65E01 | 121 | 0.119 | 0.488 | 0 | 0.043 | 0.015 | 0.002 | 0 | 0 | |
D2S441 | GATA8F03 | 135 | 0.118 | 0.045 | 0.161 | 0.106 | 0.223 | 0.213 | 0.792 | 0.755 |
D7S1808 | GGAA3F06 | 252 | 0.115 | 0.008 | 0.019 | 0 | 0.050 | 0.305 | 0.030 | 0.519 |
TTTA028 | 187 | 0.114 | 0.146 | 0.487 | 0.517 | 0.242 | 0.021 | 0 | 0.019 |