Table 7. Genic Sequences Harboring Nonreference TE Insertions in the Resequenced Soybean Population.

	UTRs		Exons		Introns
Types of Nonreference TEs	No.	%	No.	%	No.	%
In the whole genome
LTR-RTs/copia	69	9.61	282	39.28	367	51.11
LTR-RTs/gypsy	37	6.55	211	37.35	317	56.11
LTR-RTs	106	8.26	493	38.43	684	53.31
DNA TEs	40	18.18	75	34.09	105	47.73
LTR-RTs and DNA TEs	152	9.54	573	35.95	869	54.52
In chromosomal arms
LTR-RTs/copia	45	10.04	172	38.39	231	51.56
LTR-RTs/gypsy	20	5.56	130	36.11	210	58.33
LTR-RTs	65	8.04	302	37.38	441	54.58
DNA TEs	30	18.99	45	28.48	83	52.53
LTR-RTs and DNA TEs	100	9.61	351	33.72	590	56.68
In pericentromeric regions
LTR-RTs/copia	24	8.89	110	40.74	136	50.37
LTR-RTs/gypsy	17	8.29	81	39.51	107	52.20
LTR-RTs	41	8.63	191	40.21	243	51.16
DNA TEs	10	16.13	30	48.39	22	35.48
LTR-RTs and DNA TEs	52	9.40	222	40.14	279	50.45