Table 1. Short List of Up- and Downregulated Genes in FUL1/2 RNAi Fruits.
| Primary Accession | iTAG Locus | Log2 ratio RNAi/Wild Type | Annotation | Reference |
|---|---|---|---|---|
| BT013224 | Solyc06g069430* | −4.5 | FUL1/TDR4 | Busi et al. (2003) |
| AM949788 | Solyc02g067750* | −3.6 | Carbonic anhydrase3 (CA3) | Fujisawa et al. (2011) |
| TA41663_4081 | Solyc08g082170 | −3.1 | Polygalacturonase (pectinase) homolog (PG) | |
| BP880561 | Solyc10g080210* | −2.9 | PG2A (endopolygalacturonase) | Sheehy et al. (1987) |
| Knapp et al. (1989) | ||||
| Eriksson et al. (2004) | ||||
| Alba et al. (2005) | ||||
| AK327129 | Solyc06g035530* | −2.8 | Gibberellin 20-oxidase-2 (20ox-2) | Fujisawa et al. (2012) |
| BM412293 | Solyc03g114830 | −2.7 | FUL2 / MBP7 | Hileman et al. (2006) |
| BE451418 | Solyc06g061080 | −2.6 | NAM TF homolog | |
| BG126642 | Solyc05g047460 | −2.3 | Auxin response factor ARF19-1 | |
| AF230372 | Solyc07g049690 | −1.8 | Fatty acid hydroperoxide lyase HPL1 | |
| TA56518_4081 | Solyc11g005120 | −1.6 | MADS box TF MBP22 | Hileman et al. (2006) |
| Y14810 | Solyc03g007960 | −1.6 | CHY2/CrtR-b2 (carotene β-hydroxylase) | Galpaz et al. (2006) |
| AF143812 | Solyc01g067890* | −1.6 | DXS1 (1-d-deoxyxylulose 5-phosphate synthase) | Alba et al. (2005) |
| Lois et al. (2000) | ||||
| Fujisawa et al. (2012) | ||||
| AK321432 | Solyc06g084260 | −1.3 | Chalcone isomerase homolog | |
| AK320087 | Solyc06g069760 | −1.3 | AOBP (ascorbate oxidase promoter binding protein) | Alba et al. (2005) |
| AK326929 | Solyc06g060170 | −1.2 | Polygalacturonase (pectinase) homolog | |
| AF195507 | Solyc01g097810 | −1.2 | ζ-Carotene desaturase | Isaacson et al. (2002) |
| AB041811 | Solyc10g047030 | −1.2 | β-d-xylosidase (XYL1) | Itai et al. (2003) |
| AY360170 | Solyc08g076470 | −1.2 | Glycerol-3-P acetyltransferase (GPAT) | |
| AB359914 | Solyc11g011920* | +1.2 | Glu decarboxylase (GAD2) | |
| AY508112 | Solyc02g067180* | +1.4 | Cystathionine γ-synthase (CGS) | |
| DB714856 | Solyc11g044910 | +1.9 | β-d-xylosidase (XYL2) | Itai et al. (2003) |
| BM412023 | Solyc03g098240* | +1.9 | Glu decarboxylase (GAD3) | |
| BP883976 | Solyc10g086480 | +2.0 | Pectin acetyl transferase | Eriksson et al. (2004) |
| AB359913 | Solyc03g098240 | +2.1 | Glu decarboxylase (GAD1) | |
| CK715255 | Solyc06g082550 | +2.3 | Cinnamic acid 4-hydroxylase | |
| AF328785 | Solyc01g009170 | +2.7 | EIN3-like transcription factor EIL2 | |
| BG128054 | Solyc01g079240 | +3.1 | Long-chain acyl-CoA synthetase | |
| BG628578 | Solyc11g065770 | +3.5 | Cytochrome P450-dependent fatty acid hydroxylase (CYP94A25) | |
| AK322239 | Solyc04g063210 | +3.7 | Caffeoyl-CoA 3-O-methyltransferase | |
| AK324919 | Solyc01g099020 | +5.3 | GDSL-like Lipase | |
| AK325197 | Solyc03g123830* | +5.5 | Putative d-3-phosphoglycerate dehydrogenase (PGDH) | Qin et al. (2012) |
| DQ205653 | Solyc03g093390* | +6.6 | Expansin (EXPB2) |
Asterisks indicate genes found to be regulated by RIN, as mentioned in the text.