Table 1. Nucleotide frequencies of TSD and its flanking sequences of complete elements (n = 59) and solo-LTRs (n = 112) of PbTRIM family.
Position | −5 | −4 | −3 | −2 | −1 | T1 | T2 | T3 | T4 | +1 | +2 | +3 | +4 | +5 |
A | 63 | 45 | 84 | 78 | 79 | 96 | 37 | 117 | 17 | 57 | 62 | 78 | 59 | 68 |
C | 13 | 32 | 5 | 23 | 18 | 25 | 4 | 4 | 26 | 13 | 10 | 4 | 30 | 18 |
G | 15 | 30 | 3 | 9 | 14 | 35 | 3 | 8 | 19 | 21 | 22 | 4 | 34 | 14 |
T | 80 | 64 | 79 | 61 | 60 | 15 | 127 | 42 | 109 | 80 | 77 | 85 | 48 | 71 |
Note: T1 and T4 represent the 4 nucleotides of the TSD. The negative (−) and positive (+) signs respectively denote the upstream and downstream position of the nucleotide from the 4-bp TSD region.