Skip to main content
. 2012 Nov 24;13:666. doi: 10.1186/1471-2164-13-666

Table 3.

SB and GATK-SB difference

Chr Pos a1 b2 c3 d4 SB GATK-SB Fisher Genotype GATK Genotype GWAS
7
 43917013
 11
 2
 20
 0
 2.54
 0.16
 0.85
 AG
 AA
14
 95923670
 16
 2
 10
 0
 1.56
 0.12
 0.48
 CT
 TT
19 57088850 8 2 16 0 2.6 0.21 0.86 AC AA

1. Forward strand reference allele.

2. Forward strand non reference allele.

3. Reverse strand reference allele.

4. Reverse strand non reference allele.