Table 2. Characteristics of the SOLiD-SAGE tags.

	Total tags	Tags with NlaIII site	Tags after removal of those with >10 As	Plant mapped tags (% of potential mappable)	Fungal mapped tags (% of potential mappable)
S1139E-
Replicate 1	10,266,193	7,208,225	7,194,891	4,346,031 (60%)	NA
Replicate 2	8,048,623	5,629,653	5,613,295	3,303,965 (59%)	NA
Replicate 3	6,015,959	4,019,984	4,012,492	2,269,416 (56%)	NA
S1139RC
Replicate 1	5,415,607	3,044,831	3,041,847	1,137,472 (37%)	43,199 (1.4%)
Replicate 2	6,165,530	4,031,091	4,025,153	2,160,008 (54%)	112,294 (2.8%)
Replicate 3	5,736,324	3,364,721	3,361,001	1,471,380 (44%)	71,927 (2.1%)