Table I. Fold changes in gene expression between CnAIP2 and the wild type at different life cycle stages as determined by microarray analyses.
Genes shown are examples of those that may play roles in each of the stages.
| Gene Name (Plays Role in) | Expression Fold Change |
|
|---|---|---|
| CnAIP2/Wild Type | Wild Type/CnAIP2 | |
| 7-DAP seeds | ||
| AT2G33830 (dormancy/auxin-associated protein) | 26.5 | |
| AT2G45180 (seed storage/LTP family protein) | 8.1 | |
| AT3G22490 (seed development, LEA protein) | 31.1 | |
| AT4G36600 (LEA domain-containing protein) | 5.9 | |
| AT5G23360 (ABA-responsive protein-related) | 4.0 | |
| ATEXPA2 (seed development) | 11.0 | |
| DAG1 (dormancy and germination) | 3.1 | |
| DREB1A (responses to ABA, dehydration in seed) | 7.8 | |
| DYL1 (dormancy-associated protein) | 16.3 | |
| GEA6 (seed development, late embryogenesis) | 41.7 | |
| M10 (seed development, LEA-like protein) | 8.6 | |
| MEE14 (embryo development) | 15.6 | |
| MEE38 (embryo development) | 6.3 | |
| RAB18 (response to ABA) | 5.8 | |
| UNE15 (embryo development) | 27.2 | |
| ABA1 (ABA biosynthesis) | 2.5 | |
| ABI3 (seed development) | 4.5 | |
| AHG1 (ABA responses, seed germination) | 4.7 | |
| AT1G02820 (LEA3 family protein) | 5.6 | |
| AT1G52690 (LEA protein, putative) | 8.9 | |
| AT2G03850 (LEA domain-containing protein) | 7.8 | |
| AT2G18370 (seed storage/lipid transfer protein) | 37.5 | |
| AT2S3 (lipid binding/nutrient reservoir) | 8.3 | |
| AT3G02480 (ABA-responsive protein-related) | 87.7 | |
| AT3G15670 (LEA protein, putative) | 5.1 | |
| AT3G22620 (seed storage/LTP family protein) | 12.1 | |
| AT3G54510 (early responsive to dehydration) | 22.7 | |
| AT3G58550 (seed storage/LTP family protein) | 46.5 | |
| AT4G21020 (LEA domain-containing protein) | 17.2 | |
| AT4G22120 (early responsive to dehydration) | 11.3 | |
| AT4G27140 (2S seed storage protein1) | 27.5 | |
| AT5G44310 (LEA domain-containing protein) | 9.3 | |
| ATPER1 (antioxidant/seed dormancy) | 23.4 | |
| ATS1 (embryo development) | 16.7 | |
| ATS3 (seed development) | 25.6 | |
| CRA1 (seed storage protein) | 22.1 | |
| CRU2 (seed storage protein) | 36.0 | |
| CRU3 (seed storage protein) | 22.7 | |
| DOG1 (dormancy and germination) | 5.5 | |
| EDA4 (embryo development) | 15.2 | |
| FUS3 (seed development) | 6.5 | |
| LEA (dehydrin LEA) | 12.3 | |
| LEC1 (seed development) | 1.4 | |
| MEE55 (embryo development) | 5.8 | |
| OLEO2 (seed lipid accumulation) | 8.9 | |
| TIP3;1 (water channel) | 20.7 | |
| 28-DAP seeds | ||
| AT2G10940 (seed storage/LTP family protein) | 3.3 | |
| AT5G49950 (embryogenesis) | 4.2 | |
| ATS3 (seed development) | 5.8 | |
| DOG1 (seed dormancy and germination) | 2.5 | |
| DREB1A (response to ABA, dehydration) | 3.5 | |
| ERD10 (response to ABA, seed germination) | 3.2 | |
| ERD14 (response to ABA, seed germination) | 3.1 | |
| GAMMA-TIP (water channel protein) | 4.3 | |
| AT2G03850 (LEA domain-containing protein) | 4.9 | |
| ABI2 (ABA signal transduction) | 2.8 | |
| AHG1 (ABA responses, seed development and germination) | 2.1 | |
| AMY1 (starch mobilization, responsive to ABA, GA) | 5.0 | |
| AT1G54070 (dormancy/auxin-associated protein) | 4.5 | |
| AT4G01600 (ABA-responsive protein-related) | 3.1 | |
| AT4G22120 (early responsive to dehydration) | 23.8 | |
| AT5G38195 (seed storage/lipid transfer protein) | 12.3 | |
| AT5G53270 (seed maturation family protein) | 7.9 | |
| EDA7 (embryo development) | 4.9 | |
| EMB1879 (embryo development) | 18.6 | |
| EMB2756 (embryo development) | 6.4 | |
| FUS3 (seed development) | 4.2 | |
| MEE38 (embryo development) | 17.6 | |
| MEE66 (embryo development) | 6.9 | |
| MEE69 (embryo development) | 4.2 | |
| Flower bud | ||
| AGL19 (positive regulator of flowering) | 8.2 | |
| AGL6 (flower development) | 2.8 | |
| AP3 (flower development) | 2.7 | |
| AT1G29140 (flower development) | 45.0 | |
| AT1G76530 (auxin efflux carrier family protein) | 8.7 | |
| AT2G21220 (auxin-responsive protein, putative) | 12.7 | |
| AT3G43120 (auxin-responsive protein-related) | 9.2 | |
| AT4G13790 (auxin-responsive protein, putative) | 20.6 | |
| AT5G13350 (auxin responsive) | 8.6 | |
| AT5G18010 (auxin-responsive protein, putative) | 6.0 | |
| AT5G45880 (flower development) | 35.3 | |
| ATMYB21 (flower development) | 75.3 | |
| COL1 (circadian rhythms, flower development) | 3.3 | |
| COL2 (circadian rhythms, flower development) | 3.0 | |
| ELF4 (flower development) | 2.4 | |
| FT (positive regulator of flower development) | 19.7 | |
| MAF3 (flowering regulation) | 3.2 | |
| SEP3 (flower development) | 2.2 | |
| VIN3 (flowering regulation) | 6.2 | |
| AGL31 (negative regulator of flowering) | 45.2 | |
| MAF4 (negative regulator of flowering) | 15.6 | |
| MAF5 (negative regulator of flowering) | 5.0 | |
| VRN2 (negative regulator of flowering) | 33.6 | |
| 9-d roots | ||
| AIR1 (lateral root morphogenesis) | 3.4 | |
| AIR12 (lateral root morphogenesis) | 6.0 | |
| ARR12 (root development) | 2.9 | |
| AT1G17345 (auxin-responsive protein) | 3.4 | |
| AT5G13380 (auxin-responsive protein) | 7.7 | |
| AT5G20810 (auxin-responsive protein) | 3.6 | |
| ATNRT2:1 (lateral root development) | 7.1 | |
| HB53 (root development) | 3.4 | |
| IAA14 (response to auxin, lateral root development) | 4.4 | |
| LRP1 (lateral root development) | 3.4 | |
| WAK4 (lateral root development) | 3.8 | |
| XLG3 (root development) | 4.1 | |
| AT1G48690 (auxin-responsive protein) | 5.1 | |
| AT1G56150 (auxin-responsive protein) | 3.1 | |
| AT5G03310 (auxin-responsive family protein) | 9.0 | |
| DFL1 (negatively regulates lateral root formation) | 2.1 | |
| IAA13 (response to auxin) | 2.2 | |
| IAA6 (response to auxin) | 2.3 | |
| NPH4 (lateral root primordium development) | 2.8 | |
| PIN5 (PIN-FORMED5, auxin polar transport) | 3.4 | |
| PUCHI (lateral root morphogenesis) | 3.7 | |