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. 2012 Nov 7;161(1):425–439. doi: 10.1104/pp.112.208538

Table IV. List of TFs and associated regulators of gene expression differentially expressed in nodules compared with inoculated roots.

Bin Code Name Genes No. of TFs Induced in Nodules Known
27.3.99 Unclassified 50 15
27.3.6 bHLH, basic helix-loop-helix family 67 7
27.3.60 NIN-like bZIP-related family 2 2
27.3.22 HB, homeobox TF family 33 7
27.3.11 C2H2 zinc finger family 38 14
27.3.66 Psudo-ARR TF family 3 3
27.3.14 CCAAT box-binding factor family, HAP2 4 4 HAP2.1; HAP2.3
27.3.35 bZIP TF family 19 8
28.1.3 DNA synthesis/chromatin structure, histone 10 2
27.3.44 Chromatin-remodeling factors 4 2
27.1.20 RNA processing, degradation dicer 1 1
27.3.54 Histone acetyltransferases 2 1
27.3.1 ABI3/VP1-related B3 domain-containing TF family 2 1
27.3.7 C2C2(Zn) CO-like, constans-like zinc finger family 11 1
27.3.34 Orphan family 2 1
27.3.4 ARF, auxin response factor family 8 0
27.3.52 Global TF group 1 1
27.3.63 PHD finger TF 2 1
27.3.18 E2F/DP TF family 1 1
27.3.32 WRKY domain TF family 34 7
27.3.3 AP2/EREBP, APETALA2/ethylene-responsive factor 42 12
27.3.26 MYB-related TF family 10 3
27.3.57 JUMONJI family 1 1
27.3.19 EIN3-like (EIL) TF family 1 1
27.3.25 MYB domain TF family 52 4
27.3.40 Auxin/indole-3-acetic acid family 15 0
27.3.69 SET-domain transcriptional regulator family 9 0
27.3.23 HSF, heat shock TF family 3 0
27.3.15 CCAAT box-binding factor family, HAP3 4 2
27.3.65 Polycomb group (PcG) 1 0
27.3.5 ARR 3 1 RR4
17.3.2.2 Hormone metabolism, brassinosteroid, signal transduction, BZR 1 0
27.3.9 C2C2(Zn) GATA TF family 9 1
27.3.12 C3H zinc finger family 25 8
27.3.37 AS2, lateral organ boundaries gene family 15 5
27.3.62 Nucleosome/chromatin assembly factor group 1 0
27.3.39 AtSR TF family 1 0
27.3.20 G2-like TF family, GARP 11 4
27.3.46 DNA methyltransferases 5 0
27.3.24 MADS box TF family 10 1
27.3.67 Putative transcription regulator 19 6
27.3.27 NAC domain TF family 11 5
27.3.16 CCAAT box-binding factor family, HAP5 2 2 HAP5.2
27.3.31 TUB TF family 1 0
27.3.49 GeBP like 1 0
27.3.64 PHOR1 6 0
27.3.50 General transcription 2 0
27.3.41 B3 TF family 7 0
27.3.30 Trihelix, triple-helix TF family 8 2
27.3.8 C2C2(Zn) DOF zinc finger family 12 1
27.3.29 TCP TF family 6 3
27.3.17 CPP(Zn), CPP1-related TF family 1 0
27.3.21 GRAS TF family 9 5