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. 2012 May 30;13:112. doi: 10.1186/1471-2105-13-112

Table 1.

Summarized interpretation of top 10 components. Group A and B are the subcomponents of Figure 3

Comp. Biological Interpretation Compounds in Group A Compounds in Group B VolSurf Interpretation
1
Classic growth factor signaling: (MAP and protein kinase signaling)
Sulfonamides, antibiotics, carbonic anhydrase inhibitors
Antipsychotic and antihistaminic compounds
High lipophilicity
2
DNA damage
Contrast agents, antibiotics,
DNA damaging agents, antimetabolites
Strong lipophilic areas emphasized
3
Stress response, mitochondrial and anabolic metabolism
DNA damaging agents
GPCR antagonists, ion channel blockers
Polar interactions enriched
4
Cytoskeleton, cell adhesion and migration
GPCR liganda, macrocyclic cmpds and contrast agents
Beta adrenergic agonists, other GPCR ligands
N/A
5
Differentiation, EMT, stemness
NSAIDS, cAMP signaling promoting compounds
HDAC Inhibitors, HDAC-like
Significantly enriched with pharmacophoric features*
6
Inflammatory and differentiation signaling
N/A
Protein synthesis inhibitors, anti-diabetics, cardiac glycosides
Pharmacophoric features*
7
GPCR and cytokine signaling
N/A
Cardiac glycosides, cephalosporins
Pharmacophoric features*
8
Growth factor and cell adhesion signaling
Cardiac glycosides
β-adrenergic agonists, Ca2+ channel blockers
Integy-moment and significant pharmacophoric enriched*
9
Amino acid and nitrogen metabolism
Protein synthesis inhibitors
Anti-diabetics
Integy-moment and significant pharmacophoric enriched*
10 Cancer signaling DNA damaging agents Corticosteroids, ionophores Size shape type descriptors

The pharmacophoric enrichment analysis (marked with “*”) was carried out over VolSurf features (Additional file 5: VolSurf_Classification.xls) considered as a gold standard, and measuring enrichment of the list in a component by a hypergeometric test.