Table 3.

Estimated Preferential Pairing Factor With Two Simulated Markers in Repulsion When the True Preferential Pairing Factor is 0.40 or 0.60

		pc= 0.4				p = 0.666
d(M)a	nb	p_estd	Stde	No. overf	No. underg	p_est	Std	No. over	No. under
0.45	50	0.374	0.008	252	210	0.503	0.007	463	82
	100	0.382	0.008	212	102	0.540	0.006	468	16
	250	0.399	0.006	113	31	0.582	0.004	518	0
	500	0.400	0.005	51	8	0.605	0.003	520	0
	1000	0.405	0.003	8	0	0.625	0.002	531	0
	5000	0.402	0.002	0	0	0.648	0.0009	530	0
	10000	0.400	0.001	0	0	0.652	0.0007	499	0
0.25	50	0.396	0.006	126	47	0.587	0.004	527	1
	100	0.399	0.005	71	6	0.611	0.003	566	0
	250	0.403	0.003	8	0	0.628	0.002	492	0
	500	0.400	0.002	0	0	0.637	0.001	496	0
	1000	0.402	0.002	0	0	0.647	0.0009	533	0
0.05	50	0.402	0.004	7	0	0.640	0.001	548	0
	100	0.400	0.003	0	0	0.648	0.001	438	0
	250	0.398	0.002	0	0	0.653	0.0006	523	0
	500	0.397	0.001	0	0	0.657	0.0004	446	0
	1000	0.400	0.0008	0	0	0.660	0.0003	469	0

^aThe genetic distance between the two markers with unit Morgan (M).

^bThe sample size.

^cThe true value of the preferential pairing factor used in simulation.

^dThe average of 1000 estimated preferential pairing factors from 1000 simulated data sets.

^eThe standard error of the 1000 estimated preferential pairing factors.

^fThe number of estimated preferential pairing factors larger than two-thirds.

^gThe number of negative estimated preferential pairing factors.