Table 1.
Summary of the sequencing and assembly
| Sequence (n) | Bases (bp) | |
|---|---|---|
|
Sequencing |
|
|
| Raw reads |
503,789 |
199,554,589 |
| Average read length |
396 bp |
|
| High-quality reads |
445,787 |
175,500,089 |
| Reads used in assembly |
421,845 |
165,785,088 |
| Average read length after trimming |
393 bp |
|
|
Contigs |
|
|
| Reads assembled as contigs |
382,884 |
150,473,414 |
| Number of contigs |
13,426 |
13,438,442 |
| Average length of contigs |
1,000 bp |
|
| Range of contig length |
50-9,881 bp |
|
| Depth on contigs |
14.48 |
|
|
Isotigs |
|
|
| Number of isotigs |
10,784 |
16,340,803 |
| Average length of isotigs |
1,515 bp |
|
| Range of isotig length |
50-13,194 |
|
| Depth on isotigs | 1.24 |