Table 1.
Currently integrated programs
| Name | Details | |
|---|---|---|
|
MapReduce programs |
CloudBurst
[4] |
Highly sensitive short read mapping with MapReduce. |
| |
Myrna
[5] |
A cloud computing tool for calculating differential gene expression in large RNA-seq datasets. |
| |
Crossbow
[6] |
A scalable software pipeline for whole genome re-sequencing analysis. |
| |
FastQ-Preprocessing4 |
Quality control for high throughput sequence data in fastq format. |
| |
SNPFinder4 |
Filters and extracts certain SNPs from genome wide association studies datasets. |
| |
Hadoop-Examples
[3] |
Several Hadoop example applications including Sort and Grep. |
|
System images |
Cloud BioLinux
[10] |
An AWS-EC2 image that includes a wide range of biological software, programming libraries as well as data sets. |
| |
RStudio
[11] |
An AWS-EC2 image that enables the usage of all R programming tools via a web interface. |
| Web applications | HaploGrep [13] | A web application to determine mitochondrial DNA haplogroups. |