Table 2.

Mitochondrial (mtDNA) and nuclear (nucDNA) loci used in this study

Gene	Model	N taxa	N sites
12S rRNA [mtDNA]	GTR+I+Γ	391	724
Breast and ovarian cancer susceptibility protein exon 11 (BRCA1) [nucDNA]	TVM+I+Γ	99	2977
Control region (DLOOP) [mtDNA]	HKY+I+Γ	45	996
Cytochrome oxydase 3 (COX3) [mtDNA]	GTR+I+Γ	105	784
Cytochrome b (CYTB) [mtDNA]	GTR+I+Γ	1152	1140
Interphotoreceptor retinoid-binding protein exon 1 (RBP3) [nucDNA]	GTR+I+Γ	536	1302
Growth hormone receptor (GHR) exon 10 [nucDNA]	HKY+I+Γ	282	974
NADH dehydrogenase 4 (NADH4) [mtDNA]	GTR+I+Γ	99	1389
NADH dehydrogenase 1 (NADH1) [mtDNA]	TVM+I+Γ	45	961
Recombination activating protein 1 exon 1 (RAG1) [nucDNA]	GTR+I+Γ	238	3044
von Willebrand gene (vWF) exon 28 [nucDNA]	TrN+I+Γ	110	1272

The abbreviated models are the following: HKY: Hasegawa, Kishino, Yano [79]; GTR: General Time Reversible [80,81]; TrN: Tamura-Nei [82]; TVM: Transversion Model; + Γ: variation in rates among sites modeled using a gamma distribution [83]; +I; a proportion of sites modeled as invariant [79]. N taxa = number of available taxa on public databases. N sites = Number of aligned nucleotides.