Table 1. Description of implemented features.

Feature	Description
LOW_COV_PE	low read coverage areas (all aligned reads).
HIGH_COV_PE	high read coverage areas (all aligned reads).
LOW_NORM_COV_PE	low paired-read coverage areas (only properly aligned pairs).
HIGH_NORM_COV_PE	high paired-read coverage areas (only properly aligned pairs).
COMPR_PE	low CE-statistics computed on PE-reads.
STRECH_PE	high CE-statistics computed on PE-reads.
HIGH_SINGLE_PE	high number of PE reads with unmapped pair.
HIGH_SPAN_PE	high number of PE reads with pair mapped in a different contig/scaffold.
HIGH_OUTIE_PE	high number of mis-oriented or too distant PE reads.
COMPR_MP	low CE-statistics computed on MP reads.
STRECH_MP	high CE-statistics computed on MP reads.
HIGH_SINGLE_MP	high number of MP reads with unmapped pair.
HIGH_SPAN_MP	high number of MP reads with pair mapped in a different contig/scaffold.
HIGH_OUTIE_MP	high number of mis-oriented or too distant MP reads.

The Table provides a brief description for each implemented feature.