Table 2.
Parameters used in the modeling.
| Parameter | Interval studied | Comment and/or reference |
|---|---|---|
| Diffusion coefficient | D = 10−9 m2 s−1 = 103 μm2 s−1 | For diffusion in aqueous buffer D = 1.7 × 10−9 m2s-1 (van Stroe-Biezen et al., 1993); molecular crowding decreases D by approx. 20–50% (Straube and Ridgway, 2009) |
| Frequency | 0.01–1 Hz | Assumed to lie in the same range as for Ca2+ (Jaffe, 1993) |
| Distance from source to target | 1–10 μm | Typical cellular distances |
| Size of area on PM emitting synchronized pulse | Single channel – 10 μm × 10 μm | Relevant cellular dimensions |
| Assumed peak/trough ratio required to transmit signal | 10–100-fold | |
| Minimal detection concentration | 1–100 μM | Lower boundary is ten times the min. Ca2+ concentration measured in animal cells (Alberts et al., 1994); upper boundary is at the lower end of the average concentration measured in plant cells (Møller et al., 2007) |
| Maximal flux through a membrane channel | 109 molecules s−1 channel−1 = 1.7 × 10−15 mol s−1 channel−1 | Total flux for both water and H2O2 |
| Channel density | ρa = 30 channel μm−2 | Li et al. (2011) |
| Maximal H2O2 flux per μm2 | 10−16 mol μm−2s−1 | Calculated using the maximal flux and the channel density and assuming no selectivity of the channels |
| Maximal degradation rate | Vmax = 1–100 μM s−1 | Lowest level estimated from Bonifacio et al. (2011) |
| Michaelis constant | 20 μM for H2O2, values in the range 2–200 μM are considered | 20 μM is the average for ascorbate peroxidases reviewed in Raven (2003) |
| Cytoplasmic streaming speed | 1–100 μm s−1 | Goldstein et al. (2008) |
| Cytoplasmic stream width | 1–10 μm | Kristiansen et al. (2009) |