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. 2012 Jun 6;21(1):34–39. doi: 10.1038/ejhg.2012.93

Table 2.  Missense mutation overview for the Connexin47 protein: molecular modelling analysis.

Mutation a Position b Modelling analysis prediction References c
p.Ile33Met (Ile36Met) TMD Possible interference of the long 33Met side chain with the canonical hydrogen bonding between the adjacent helices. 33Met, being in short contact with the Trp3 side chain, might cause the displacement of the N-terminal helix of each Cx47 monomer towards the inner side of the hemichannel thus (partially) blocking the pore. 14
p.Ile43Met (Ile46Met) TMD The replaced 43Met might interact with Arg257, thus perturbing the salt bridge formed between Asp46, Arg257 and Glu260, and possibly misplacing the extracellular loop of the connexon. 9
p.Pro87Ser (Pro90Ser) TMD The new Pro87, inducing a 30° kink in α-helix could alter the transport properties. 2
p.Gly146Ser (Gly149Ser) ICD 146Ser introduces less flexible residues in place of a glycine adding a polar group within the cytoplasmatic region of the protein. 7
p.Gly233Ser (Gly236Ser) ECD 233Ser introduces less flexible residues in place of a glycine adding a polar group between the extracellular and the membrane region of the protein. 4
p.Gly233Arg (Gly236Arg) ECD 233Arg introduces less flexible residues in place of a glycine adding a charged group between the extracellular and the membrane region of the protein. This could mildly interfere with the correct formation of the pore. 7
p.Glu260Lys ECD See legend of Figure 2. Present study
p.Thr262Ala (Thr265Ala) TMD The new hydrophobic 262Ala residue, replacing a polar threonine, is supposed to prevent a H-bond formation with Glu235. 7
p.Tyr269Asp (Tyr272Asp) TMD The new 269Asp adds a negative charge in the membrane deleting at the same time, the contribution of the aromatic ring of the tyrosine. 2
p.Met283Thr (Met286Thr) TMD 283Thr changes the local hydrophobic properties of a transmembrane helix by introducing a polar residue. 2

Abbreviations: ECD, Extracellular domain; ICD, Intracellular domain; TMD, Transmembrane domain.

a

All mutations are described according to Orthmann-Murphy et al.16 Traditional amino-acid residue numbering has nevertheless also been provided in parentheses. Note that p.Thr395Ile (Thr398Ile), occurring in a region of the model having low homology (see Material and Methods), was excluded from this analysis.

b

Position is given according to UniProtKB http://www.uniprot.org/.27

c

Referred to the first report.