Table 1.
Description of the 27 alfalfa genotypes used in this study, their approximate fall dormancy level, and overall sequence statistics
| Entry | Group† | Source or Reference‡ | Ploidy | Subspecies | Approximate fall dormancy level* | Total reads (millions) | Reads aligned (%) | Uniquely aligned reads (%) |
|---|---|---|---|---|---|---|---|---|
| B75GH-402 |
1 |
FGI |
4 |
subsp. sativa |
4 |
26.5 |
92.9 |
86.3 |
| B85-912 |
1 |
FGI |
4 |
subsp. sativa |
4 |
23.9 |
92.8 |
86.0 |
| B85-920 |
1 |
FGI |
4 |
subsp. sativa |
4 |
29.5 |
92.9 |
86.6 |
| B86-220 |
1 |
FGI |
4 |
subsp. sativa |
4 |
29.9 |
93.4 |
87.2 |
| CW A-9 |
1 |
C/W |
4 |
subsp. sativa |
9 |
28.2 |
93.2 |
87.1 |
| CW B-7 |
1 |
C/W |
4 |
subsp. sativa |
7 |
31.6 |
93.3 |
87.0 |
| CW D-10 |
1 |
C/W |
4 |
subsp. sativa |
10 |
27.5 |
92.9 |
86.6 |
| CW I-4 |
1 |
C/W |
4 |
subsp. sativa |
4 |
24.8 |
92.7 |
85.9 |
|
CV020017 |
1 |
Pioneer |
4 |
subsp. sativa |
4 |
28.1 |
92.8 |
86.4 |
|
DW000577 |
1 |
Pioneer |
4 |
subsp. sativa |
4 |
24.5 |
92.9 |
86.3 |
|
LH050543 |
1 |
Pioneer |
4 |
subsp. sativa |
3 |
24.9 |
92.8 |
86.4 |
| NL002724 |
1 |
Pioneer |
4 |
subsp. sativa |
4 |
23.1 |
93.8 |
88.5 |
| DL317 |
1 |
DL |
4 |
subsp. sativa |
8 |
28.1 |
92.9 |
86.2 |
| DL833 |
1 |
DL |
4 |
subsp. sativa |
4 |
30.1 |
93.3 |
87.0 |
| DL879W4 |
1 |
DL |
4 |
subsp. sativa |
4 |
27.4 |
93.4 |
86.9 |
| DL263 |
1 |
DL |
4 |
subsp. sativa |
4 |
24.7 |
93.3 |
87.0 |
| 95-608 |
2 |
[21] |
4 |
subsp. sativa |
9 |
28.1 |
92.8 |
86.0 |
| Altet-4 |
2 |
[21] |
4 |
subsp. sativa |
5 |
26.8 |
93.0 |
86.1 |
| NECS-141 |
2 |
[21] |
4 |
subsp. sativa |
4 |
25.8 |
92.3 |
85.6 |
| ABI408 |
2 |
[10-12] |
4 |
subsp. sativa |
3 |
27.3 |
93.2 |
86.8 |
| Gabès |
2 |
INRA,
[22] |
4 |
subsp. sativa |
10 |
17.2 |
92.7 |
86.8 |
| Magali-A |
2 |
INRA,
[22] |
4 |
subsp. sativa |
6 |
18.8 |
92.3 |
85.2 |
| PI243225-A |
3 |
NPGS |
2 |
subsp. caerulea |
unknown |
26.2 |
94.0 |
88.4 |
| PI577551-B |
3 |
NPGS |
2 |
subsp. caerulea |
unknown |
19.5 |
92.7 |
86.0 |
| PI631816-A |
3 |
NPGS |
2 |
subsp. falcata |
unknown |
25.1 |
92.6 |
86.6 |
| PI251830-K |
3 |
NPGS |
2 |
subsp. falcata |
unknown |
29.6 |
92.3 |
85.8 |
| WISFAL-6 | 3 | [10-12] | 4 | subsp. falcata | 2 | 26.8 | 93.1 | 86.7 |
†1 = elite cultivated genotypes from commercial USA breeding programs; 2 = non-elite cultivated genotypes; 3 = non-cultivated, wild germplasm.
‡FGI =Forage Genetics International; C/W = Cal/West Seeds; Pioneer = Pioneer Hi-bred, Inc.; DL = Dairyland, Inc.; INRA = French National Institute for Agricultural Research; NPGS = National Plant Germplasm System, United States Department of Agriculture.
*Fall dormancy based on the scale of 1 = very fall dormant to 11 = very non-dormant [23].