Table 3. List of marker effects for significant marker-trait pairs.

Trait	SNP	2a1	d2	d/a	2a/sp 3	Frequency4		a5
Fiber length	SNP 10	0.0637	−0.0797	−2.5024	0.7611	0.48	(G)	0.0192
	SNP19	0.0392	−0.0114	−0.5816	0.4683	0.49	(T)	0.0152
Fiber width	SNP10	3.6247	−0.8306	−0.4583	1.8285	0.48	(G)	−0.5954
	SNP22	3.9557	−2.5851	−1.3070	1.9955	0.49	(T)	0.2697
Microfiber angle	SNP29	8.2694	1.3075	0.3162	1.8279	0.46	(C)	6.2997
Holocellulose	SNP10	7.7360	2.0023	0.5177	0.7192	0.48	(G)	−2.5755
Tree height	SNP10	1.4100	−2.0458	−2.9018	0.4905	0.48	(G)	0.5098

¹Calculated as the difference between the phenotypic means observed within each homozygous class (2a = |G_BB–G_bb|, where G_ij is the trait mean in the ijth genotypic class).

²Calculated as the difference between the phenotypic mean observed within the heterozygous class and the average phenotypic mean across both homozygous classes [d = G_Bb−0.5(G_BB+G_bb), where G_ij is the trait mean in the ijth genotypic class].

³s_p, standard deviation of the phenotypic trait under consideration.

⁴Allele frequency of either the derived or minor allele. Single nucleotide polymorphism (SNP) alleles corresponding to the frequency listed are given in parentheses.

⁵The additive effect was calculated as a = p_B(G_BB)+p_b(G_Bb)–G, where G is the overall trait mean, G_ij is the trait mean in the ijth genotypic class, and p_i is the frequency of the ith marker allele. These values were always calculated with respect to the minor allele.