Table 1.
Known genomic disorder regions associated with obesity | ||||
Chr | Loci | Gene(s)a | Phenotype | OMIM |
| ||||
chr1 | 1p36 | GABRD | Chromosome 1p36 deletion syndrome | 607872 |
chr2 | 2q37 | HDAC4 | BDMR syndrome | 600430 |
chr6 | 6q16 | SIM1 | Obesity, severe | 603128 |
chr9 | 9q34 | EHMT1 | Kleefstra syndrome | 610253 |
chr11 | 11p13 | WT1, PAX6 | WAGR syndrome | 194072 |
chr15 | 15q11.2 | NDN, SNRPN | Prader-Willi syndrome | 176270 |
chr16 | 16p11.2 | SH2B1 | Chromosome 16p11.2 deletion syndrome, 220 kb | 613444 |
chr16 | 16p11.2 | TBX6 | Chromosome 16p11.2 deletion syndrome, 593 kb | 611913 |
chr17 | 17p11.2 | RAI1 | Smith-Magenis syndrome | 182290 |
| ||||
Novel CNV loci playing a role in obesity | ||||
Chr | loci | Gene(s)a | Phenotype | Refs |
| ||||
Chr1 | 1p21.3 | DPYD, MIR137 | Deletions associated with ID and (tendency) to overweight | [102] |
Chr2 | 2p25.3 | MYT1L | Deletions associated with ID and obesity/overweight | [103] |
Chr6 | 6q14q15 | HTR1E, ME1, CYB5R4, SNX14 | Deletions Associated with DD, obesity, and a distinct clinical phenotype | [104] |
Chr6 | 6q22 | VGLL2 | Less penetrant locus for a PWS-like phenotype | [98] |
Chr11 | 11p14.1 | BDNF | Deletions associated with ADHD, DD, autism, and obesity | [105] |
Chr19 | 19q12q13.2 | AKT2, CEACAM1, CEBPA, LIPE, TGFB1 | Duplications described in patients with DD and obesity | [106] |
All coordinates are according to build36. Chr.: chromosome; OMIM: Online Mendelian Inheritance in Man; Refs: references.
aPotential candidate genes for the syndrome phenotype and/or obesity or identifiers of the genomic locations.