Table 3.
Top 10 segments ranked by proportion of variance
|
Protein yield |
Fat yield |
Milk yield |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Prop Var | CHR | Start | End | Prop Var | CHR | Start | End | Prop Var | CHR | Start | End |
|
JER-AUS | |||||||||||
|
2.51 |
14 |
1324152 |
2524432 |
2.63 |
14 |
1324152 |
2524432 |
9.23 |
14 |
1324152 |
2524432 |
| 0.94 |
8 |
53145498 |
53823453 |
0.53 |
6 |
32804873 |
33205790 |
1.03 |
23 |
33488986 |
34003600 |
| 0.49 |
29 |
32616370 |
33148216 |
0.5 |
16 |
34988324 |
35436695 |
0.88 |
20 |
17220850 |
17690967 |
| 0.46 |
13 |
63320438 |
64620664 |
0.26 |
9 |
47503904 |
48177473 |
0.75 |
16 |
35920 |
804371 |
| 0.38 |
23 |
36309465 |
36929103 |
0.21 |
27 |
35936818 |
36385854 |
0.45 |
23 |
39769575 |
40258674 |
| 0.34 |
3 |
89581663 |
89898693 |
0.2 |
1 |
127226200 |
127917611 |
0.33 |
10 |
30761581 |
31494927 |
| 0.31 |
17 |
69563223 |
70374082 |
0.18 |
22 |
60504152 |
60873210 |
0.24 |
8 |
73117701 |
73898467 |
| 0.31 |
29 |
33157623 |
33719571 |
0.17 |
12 |
34663468 |
35292842 |
0.22 |
5 |
93922247 |
94302255 |
| 0.3 |
29 |
34401183 |
34817726 |
0.15 |
13 |
27805120 |
28346480 |
0.2 |
20 |
28252035 |
28774228 |
| 0.25 |
9 |
48742490 |
49474068 |
0.15 |
5 |
120908187 |
121179132 |
0.17 |
20 |
34452105 |
35077755 |
|
HOL-AUS | |||||||||||
|
10.38 |
14 |
1324152 |
2524432 |
17.97 |
14 |
1324152 |
2524432 |
16.05 |
14 |
1324152 |
2524432 |
| 1.27 |
6 |
88537190 |
88996262 |
2.71 |
5 |
93922247 |
94302255 |
0.7 |
6 |
88537190 |
88996262 |
| 0.58 |
7 |
82862759 |
83380203 |
0.34 |
5 |
93301390 |
93920010 |
0.66 |
20 |
31054019 |
31704692 |
| 0.52 |
18 |
58283983 |
59602905 |
0.31 |
2 |
107799001 |
108408740 |
0.63 |
5 |
93301390 |
93920010 |
| 0.48 |
3 |
117198648 |
117541474 |
0.28 |
26 |
20643699 |
21338653 |
0.46 |
18 |
33639529 |
33910770 |
| 0.44 |
6 |
89469872 |
90304531 |
0.25 |
4 |
106613116 |
107060437 |
0.42 |
7 |
82862759 |
83380203 |
| 0.31 |
28 |
18048845 |
18758510 |
0.18 |
25 |
8073067 |
8481205 |
0.37 |
14 |
69793328 |
70364164 |
| 0.3 |
11 |
38575857 |
38932630 |
0.16 |
11 |
102944335 |
103540503 |
0.33 |
20 |
34452105 |
35077755 |
| 0.2 |
1 |
136016808 |
136624372 |
0.12 |
20 |
36176136 |
36613401 |
0.31 |
25 |
14686647 |
15151658 |
| 0.2 |
18 |
57084113 |
57818432 |
0.11 |
16 |
56014214 |
56706854 |
0.28 |
11 |
46783081 |
47198727 |
|
HOL-NOR | |||||||||||
|
4.85 |
14 |
1324152 |
2524432 |
24.35 |
14 |
1324152 |
2524432 |
13.49 |
14 |
1324152 |
2524432 |
| 0.39 |
19 |
26550090 |
27153052 |
2.65 |
5 |
93922247 |
94302255 |
2.37 |
20 |
29983162 |
31051302 |
| 0.31 |
7 |
23881292 |
24505374 |
0.76 |
19 |
20077363 |
20545023 |
0.9 |
5 |
92171816 |
92734379 |
| 0.31 |
5 |
20094983 |
20608440 |
0.64 |
5 |
20094983 |
20608440 |
0.89 |
5 |
92736297 |
93292054 |
| 0.28 |
6 |
86786552 |
87331055 |
0.5 |
15 |
44850860 |
45134081 |
0.63 |
5 |
20094983 |
20608440 |
| 0.25 |
11 |
102944335 |
103540503 |
0.26 |
20 |
63502967 |
63925075 |
0.46 |
5 |
93922247 |
94302255 |
| 0.23 |
22 |
42655109 |
43216893 |
0.25 |
19 |
26550090 |
27153052 |
0.38 |
15 |
52804974 |
53411913 |
| 0.18 |
23 |
11564383 |
12095383 |
0.23 |
2 |
127612583 |
128084951 |
0.33 |
24 |
59281770 |
59735242 |
| 0.16 |
24 |
59281770 |
59735242 |
0.21 |
26 |
20043160 |
20630551 |
0.33 |
6 |
88023038 |
88527916 |
| 0.16 | 20 | 69275055 | 69727331 | 0.19 | 13 | 10469479 | 11785572 | 0.23 | 11 | 101054186 | 101516564 |
Proportion of variance (Prop Var) explained for Jersey (JER-AUS), Australian Holstein (HOL-AUS) and Nordic Holstein (HOL-NOR) populations. Segment size is 100 SNPs. Start and end points of the segments are given as base positions of the first and last SNP in the segment. Segments that appear in more than one breed are highlighted in bold.