Table 1. Caragana intermedia candidate reference genes descriptions and comparison with Arabidopsis orthologs.
Gene symbol | Gene name | GenBankAccession | Arabidopsishomolog locus | Primer sequence (5′–3′) | Ampliconlength (bp) | Tm(°C) | PCRefficiency (%) |
ACT7 | Actin7 | JX272637 | AT5G09810 | CCGAAGAGCATCCAGTTTTG | 58 | 78.5 | 100.67 |
TCACGGTTAGCCTTGGGGTT | |||||||
EF-1α | Elongation factor -1α | JX272638 | AT5G60390 | AGATGGTTCCCACTAAGCCTATG | 115 | 82.6 | 93.13 |
ACACTCTTGATGACTCCAACTGC | |||||||
TUA5 | Alpha Tubulin | JX272639 | AT5G19780 | CTGATGTGGTTGTGCTTTTGGAC | 183 | 80.8 | 93.11 |
GGTTTGTCTGGAACTCGGTAATG | |||||||
F-box | F-box/kelch-repeat protein | JX272640 | AT5G15710 | AATGGGTCGTGGAGGGTCTA | 71 | 82.3 | 94.80 |
AACCCCTTGGCTTGGTCTTA | |||||||
PEPKR1 | Phosphoenolpyruvate carboxylase-related Kinase 1 | JX272641 | AT1G12580 | GAACAGTTGGGTTGGGGACA | 181 | 82.4 | 94.05 |
GATCCACAACATTCGGGTGC | |||||||
PP2A | Protein phosphatase 2A | JX272642 | AT1G10430 | TTTCGGATAGGAGGAAATGCAC | 106 | 80.3 | 94.18 |
TCAAGGCCACCAAAAGCGTA | |||||||
SAND | SAND family protein | JX272643 | AT2G28390 | ATACTCGTCAACAGCAGAAA | 133 | 79.8 | 91.46 |
GTCACCCAACATAAAAGAAC | |||||||
TIP41 | TIP41-like family protein | JX272644 | AT4G34270 | CGTCCAAGAGTGGGAACAGA | 167 | 81.7 | 90.22 |
GAACTTCAACAGGCGGCAAG | |||||||
UNK1 | Hypothetical protein | JX272645 | AT1G31300 | CAATGTTGAGTGGGGAGGGA | 162 | 81.2 | 97.41 |
CAACCAGCCAAGCAAGGAAT | |||||||
UNK2 | Hypothetical protein | JX272646 | AT4G33380 | CAAAGATAGTGCTGCTGATTGC | 147 | 81.6 | 92.64 |
TCCTGGTGTTTGTGCTGATAGA | |||||||
DREB1* | Dehydration responsive element binding protein 1 | KC123242 | AT4G25480 | TTCTGACCCACAACCTTACTC | 167 | 86.5 | 96.40 |
TCTTCTTGTTTGGTTCCCTTA | |||||||
DREB2* | Dehydration responsive element binding protein 2 | JX272647 | AT2G40340 | GAAAGGGTGTATGAAAGGTA | 228 | 83.4 | 92.56 |
GTTATGTGAGGGAAGTTGAG |
Notes: * used for normalization validation under cold or salt stress conditions.