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. 2013 Jan 2;8(1):e53196. doi: 10.1371/journal.pone.0053196

Table 1. Caragana intermedia candidate reference genes descriptions and comparison with Arabidopsis orthologs.

Gene symbol Gene name GenBankAccession Arabidopsishomolog locus Primer sequence (5′–3′) Ampliconlength (bp) Tm(°C) PCRefficiency (%)
ACT7 Actin7 JX272637 AT5G09810 CCGAAGAGCATCCAGTTTTG 58 78.5 100.67
TCACGGTTAGCCTTGGGGTT
EF-1α Elongation factor -1α JX272638 AT5G60390 AGATGGTTCCCACTAAGCCTATG 115 82.6 93.13
ACACTCTTGATGACTCCAACTGC
TUA5 Alpha Tubulin JX272639 AT5G19780 CTGATGTGGTTGTGCTTTTGGAC 183 80.8 93.11
GGTTTGTCTGGAACTCGGTAATG
F-box F-box/kelch-repeat protein JX272640 AT5G15710 AATGGGTCGTGGAGGGTCTA 71 82.3 94.80
AACCCCTTGGCTTGGTCTTA
PEPKR1 Phosphoenolpyruvate carboxylase-related Kinase 1 JX272641 AT1G12580 GAACAGTTGGGTTGGGGACA 181 82.4 94.05
GATCCACAACATTCGGGTGC
PP2A Protein phosphatase 2A JX272642 AT1G10430 TTTCGGATAGGAGGAAATGCAC 106 80.3 94.18
TCAAGGCCACCAAAAGCGTA
SAND SAND family protein JX272643 AT2G28390 ATACTCGTCAACAGCAGAAA 133 79.8 91.46
GTCACCCAACATAAAAGAAC
TIP41 TIP41-like family protein JX272644 AT4G34270 CGTCCAAGAGTGGGAACAGA 167 81.7 90.22
GAACTTCAACAGGCGGCAAG
UNK1 Hypothetical protein JX272645 AT1G31300 CAATGTTGAGTGGGGAGGGA 162 81.2 97.41
CAACCAGCCAAGCAAGGAAT
UNK2 Hypothetical protein JX272646 AT4G33380 CAAAGATAGTGCTGCTGATTGC 147 81.6 92.64
TCCTGGTGTTTGTGCTGATAGA
DREB1* Dehydration responsive element binding protein 1 KC123242 AT4G25480 TTCTGACCCACAACCTTACTC 167 86.5 96.40
TCTTCTTGTTTGGTTCCCTTA
DREB2* Dehydration responsive element binding protein 2 JX272647 AT2G40340 GAAAGGGTGTATGAAAGGTA 228 83.4 92.56
GTTATGTGAGGGAAGTTGAG

Notes: * used for normalization validation under cold or salt stress conditions.