Table 4.

Logistic regression results for haplogroup defining mtDNA SNPs analysed in Phase 2

SNP	Basepair position	Minor Allele	**MAF	P-value	OR	L95	U95
*MitoA1719G	1719	G	0.04	0.44	1.18	0.78	1.79
MitoC4216T	4216	T	0.17	0.58	1.07	0.85	1.34
MitoA4580G	4580	G	0.04	0.79	0.94	0.58	1.52
*MitoG4917A	4917	A	0.09	0.34	0.86	0.63	1.17
MitoC7028T	7028	T	0.39	0.30	0.83	0.58	1.18
MitoA8251G	8251	G	0.04	0.73	1.08	0.71	1.63
MitoA9055G	9055	G	0.09	0.93	0.99	0.73	1.33
*MitoG10398A	10398	A	0.26	0.31	1.12	0.90	1.41
*MitoG12308A	12308	A	0.22	0.99	1.00	0.78	1.27
MitoA13368G	13368	G	0.1	0.66	0.94	0.69	1.26
MitoA13708G	13708	G	0.09	0.09	1.28	0.97	1.71
*MitoA16391G	16391	G	0.02	0.68	1.13	0.63	2.03

^*These 5 SNPs were also genotyped in Phase 1

^**Minor allele frequency in controls

OR, odds ratio; L95/U95, lower and upper bounds of the 95% confidence interval for the OR