. 2012 Dec 1;9(1):1–15. doi: 10.7150/ijbs.5249

Table 3.

Common miRNAs targeting the homologous regions in 3' UTRs of B. mori, H. armigera, and S. litura.

Gene	ID_har*	Homologous Region In 3'UTR (har)^§	ID_sli*	Homologous Region In 3'UTR (sli)^§	ID_bmo*	Homologous Region In 3'UTR (bmo)^§	Common miRNA Targets^¶
14-3-3zeta	GQ131301	6..249			AB378097	6..243	miR-263a
		6..296			DQ311235	6..291	miR-278*
					EF210316	6..291
					NM_001046699	6..291
actin	EU527017	58..141			AB701689	50..132	bantam, miR-965*
actin	EU527017	58..141			NM_001126254	50..132	bantam, miR-965*
ADP/ATP translocase	AY253868	1..28			AY227000	1..28	miR-2765
ADP/ATP translocase	AY253868	1..28			NM_001043607	1..28	miR-2765
ArgK	EF600057	1..211	HQ840714	1..211			miR-8
beta-tubulin	JF767013	100..152			AB003287	105..157	miR-2796-5p
					AB072307	106..158
					NM_001043422	106..158
CCE	FJ997310	496..541	AB521203	162..207			miR-87
chitinase	AY325496	780..976	AB032107	860..1055			miR-87
chitinase	AY325496	780..976	AY325497	861..1056			miR-87
E75			JQ266225	22..319	AB024904	21..314	miR-33, miR-278, miR-87*
					AB024905	21..314
					NM_001112609	21..314
					NM_001112610	21..314
				3..319	AF332550	3..316	miR-33, miR-278*
					AF332551	3..316
					NM_001043577	3..316
EcR			EU180021	14..51	BMOBMECRB1	14..51	miR-14, miR-9a*
					D49476	14..51
					D49478	14..51
			HM046618	117..154	NM_001043866	14..51
					NM_001173375	14..51
					BMOECDYREC	695..732
FF1			HQ260326	77..175	AB649122	82..180	miR-305*
					AF426830	82..180
					NM_001044063	82..180
			HQ260326	77..275	BMOFTZF1P	15..203	miR-305, miR-970*
Hsp21.4			HM046612	106..148	AB195972	109..154	miR-1175-3p
			HM046612	106..148	NM_001043520	109..154	miR-1175-3p
			HM046612	581..662	AB195972	568..647	miR-305
			HM046612	581..662	NM_001043520	568..647	miR-305
Hsp70	FJ432703	25..85	HM046611	27..87			miR-8
	JF417984	497..624			AB016836	370..500	miR-1a, miR-3338*
					FJ573459	370..500
					NM_001043372	370..500
Hsp90	FJ986209	9..101	HM046609	12..101			miR-14, miR-2766, miR-285, miR-998, miR-9a, miR-9c*
	HM593517	9..101	HM046609	12..101			miR-14, miR-2766, miR-285, miR-998, miR-9a, miR-9c*
	FJ986209	57..108			AB060275	43..96	miR-14, miR-2766, miR-9a, miR-9c*
	HM593517	57..108			NM_001043411	43..96	miR-14, miR-2766, miR-9a, miR-9c*
			HM046609	57..98	AB060275	43..84	miR-14, miR-2766, miR-9a, miR-9c*
			HM046609	57..98	NM_001043411	43..84	miR-14, miR-2766, miR-9a, miR-9c*
LpR			GU433377	30..69	AB211594	30..69	miR-13a
			GU433377	1304..1375	AB211594	1048..1116	miR-iab-8
			GU433377	1343..1375	AB201471	1079..1111	miR-iab-8
					AB201472	1079..1111
					AB201473	1079..1111
					AB201474	1654..1686
					NM_001111338	1079..1111
					NM_001111339	1079..1111
					NM_001111340	1079..1111
PBANR	JN228350	479..596			JN228346	843..960	miR-375*
TCTP	GU969276	33..152	HQ896486	31..149			miR-2766, miR-305, miR-989*
	GU969276	121..154			DQ003481	99..132	miR-989, miR-14, miR-2766, miR-375, miR-9c*
					EF210320	99..132
					NM_001044107	99..132
			HQ896486	118..149	DQ003481	99..130	miR-989, miR-14, miR-2766, miR-9c
					EF210320	99..130
					NM_001044107	99..130
TF AP-4	DQ224406	20..91			EU534187	21..92	miR-9a*
TF AP-4	DQ224406	20..91			NM_001123344	21..92	miR-9a*
TF POU	AY513764	549..675			BMOPOUM1	494..619	miR-2745, miR-316*
USP	EU526832	467..552	EU180022	125..212			miR-79, miR-9a*

*: "ID" indicates the "LOCUS" field in NCBI. Abbriviation: har: H. armigera; sli: S. litura; bmo: B. mori.

§: BLASTn was used to identify homologous regions in 3' UTRs. E-value threshold was set to 10^-5.

^¶: miRanda, PITA, and microTar were all used for miRNA target prediction. Only the miRNA targets being predicted by more than two software programs are included in this table.