Table 10.
Main results of eight prediction methods.
| Method | Nobs | Nprd | Ncor | Qp % | M | C | FP | FN | FAAcor % |
|---|---|---|---|---|---|---|---|---|---|
| WavePrd | 325 | 315 | 308 | 96.3 | 94.8 | 97.8 | 7 | 17 | 83.5 |
| DAS | 325 | 357 | 308 | 90.4 | 94.8 | 86.3 | 49 | 17 | 77.6 |
| HMMTOP2 | 325 | 321 | 308 | 95.4 | 94.8 | 96.0 | 13 | 17 | 84.3 |
| PHDhtm | 325 | 286 | 269 | 88.3 | 82.8 | 94.1 | 17 | 56 | 72.5 |
| PRED-TMR2 | 325 | 285 | 279 | 91.7 | 85.9 | 97.9 | 6 | 46 | 76.8 |
| SOSUI | 325 | 297 | 288 | 92.7 | 88.6 | 97.0 | 9 | 37 | 78.9 |
| TMAP | 325 | 299 | 291 | 93.4 | 89.5 | 97.3 | 8 | 34 | 81.7 |
| TMHMM2.0 | 325 | 307 | 299 | 94.7 | 92.0 | 97.4 | 8 | 26 | 84.6 |
Nobs, Nprd and Ncor are the number of observed, predicted and correctly predicted TMHs, respectively. Qp stands for prediction accuracy of TMHs, M and C stand for the measure indexes of sensitivity and specificity. FP and FN are the number of wrongly predicted TMHs and the number of not-predicted TMHs, respectively. FAAcor is the prediction accuracy of residues.