Table 1.
mRNA-seq experiments from NCBI SRA.
| Tissue/cell line | Number of experiments | SRA project ID |
Project name |
|---|---|---|---|
| Kidney | 3 | SRP000225 | Illumina sequencing human kidney RNA samples to study mRNA expression levels |
| Liver | 3 | ||
| GM12878 (Blood) | 7 | SRP000228 | RNASeq expression profiling for ENCODE project |
| Hep2G (Liver Carcinoma) | 4 | ||
| K562 (Leukemia) | 9 | ||
| Brain | 1 | SRP000626 | Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing |
| Cerebral Cortex | 1 | ||
| Heart | 1 | ||
| Liver | 1 | ||
| Lung | 1 | ||
| Skeletal Muscle | 1 | ||
| Liver female 1 | 6 | SRP001558 | Sex-specific and lineage-specific alternative splicing in primates |
| Liver male 1 | 6 | ||
| Brain MAQC2 | 14 | SRP001847 | Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments |
| UHR MAQC2 | 28 | ||