Table 5.
Coverage for the intersection (*) of two methods.
| x * y | Coverage | Number of regions |
|
|---|---|---|---|
| Score combination | Rank combination | ||
| B * F = QuEST * SISSRs | 10016 | 10016 | 10789 |
| C * F = CisGenome * SISSRs | 11211 | 11211 | 12841 |
| A * B = PeakSeq * QuEST | 11920 | 11920 | 11865 |
| A * C = PeakSeq * CisGenome | 12010 | 12010 | 12662 |
| E * F = MACS * SISSRs | 12351 | 12351 | 11003 |
| B * C = QuEST * CisGenome | 12459 | 12459 | 14452 |
| D * F = TRLocator * SISSRs | 12662 | 12662 | 10463 |
| A * F = PeakSeq * SISSRs | 12921 | 12921 | 13293 |
| A * E = PeakSeq * MACS | 13717 | 13717 | 12095 |
| A * D = PeakSeq * TRLocator | 13939 | 13939 | 11573 |
| B * E = QuEST * MACS | 14700 | 14700 | 14528 |
| B * D = QuEST * TRLocator | 14725 | 14725 | 13270 |
| C * E = CisGenome * MACS | 14947 | 14947 | 14244 |
| C * D = CisGenome * TRLocator | 15075 | 15075 | 13155 |
| D * E = TRLocator * MACS | 17725 | 17725 | 16921 |