Table 2.
Statistics of the number of transcripts and genes detected
| Sample | Number of transcripts | Number of genes | FPKMa (mean ± sd) | Coverageb (mean ± sd) | Number of genes with FPKM > 5 |
|---|---|---|---|---|---|
| Control | |||||
| 1295-ZZ-4 | 18,675 | 15,176 | 15.28 ± 85.28 | 8.54 ± 45.80 | 7876 |
| 1295-ZZ-9 | 17,134 | 14,330 | 14.36 ± 67.49 | 4.66 ± 21.03 | 6832 |
| 1295-ZZ-13 | 18,638 | 15,205 | 13.52 ± 68.07 | 7.06 ± 34.89 | 7507 |
| Case | |||||
| 1295-ZZ-21 | 18,274 | 14,883 | 14.86 ± 84.98 | 7.72 ± 43.89 | 6903 |
| 1295-ZZ-32 | 18,796 | 15,315 | 14.59 ± 167.18 | 7.14 ± 74.54 | 7359 |
| 1295-ZZ-36 | 17,837 | 14,668 | 11.84 ± 55.17 | 5.41 ± 24.17 | 6863 |
| Pooled control | 22,463 | 17,880 | 10.65 ± 70.63 | 18.04 ± 119.42 | 6134 |
| Pooled case | 22,256 | 17,620 | 11.67 ± 79.45 | 21.16 ± 143.79 | 6267 |
aFor individually sequenced dataset, we used FPKM (Fragments Per Kilobase of exon per Million fragments mapped) to estimate transcript expression.
bThe coverage was calculated based on the unit of transcript.